Sequence
atgc intronic sequence ATGC exonic sequenceGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTGAGTTCTCAGGCTCCTGAGAGGgtaattagtgcagatgtatgcatgactatttagcctttgatttgtggtcattttgatgactgtatccattatatttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os08g42530.1 (Oryza sativa), 5'ss of exon 14
GCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTGAGTTCTCAGGCTCCTGAGAGGgtaattagt-gcagatgtatgcatgactattta-gcctttgatttgtggtcattttgatgac-----tgt-atccattatatttcag------
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GCAGAGAGTGCAATAGATCAAATGGATTGGATTGAAAAGATTACTGGTGTCATTGCATCTTTGCTTAGCTCACAATCCCCAGAACAGgtcactattcgatgacccagattttattgtttatgtatttgacatgttgaattttcgtttaccaaaatgtgatggtctgtacttctgtttcag
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM5G872204_T02 (Zea mays), 5'ss of exon 14
GCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTGAGTTCTCAGGCTCCTGAGAGGgtaattagtgca-gatgtatgcatg-actatttagcctttgatttgtggtcattttgatgactgtatccattatatttcag
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GCAGAGAGTGCAGTAGATCAGATGGACTGGATTGAAAAGATAACTGGTGTTATTGCCTCTTTACTGAGCTCACAATCGCCAGAACAGgttagtaatggatggcctctgtttggattgcatgtattctggaatat--tcagtttacaatacttggctgttctgtttcag
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G093670_T01 (Zea mays), 5'ss of exon 5
GCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTGAGTTCTCAGGCTCCTGAGAGGgtaattagtgca-gatgtatgcatg-actatttagcctttgatttgtggtcattttgatgactgtatccattatatttcag
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GCAGAGAGTGCAGTAGATCAGATGGATTGGATTGAAAAGATAACTGGTGTTATTGCCCCTTTGCTGAACTCACAATCCCCAGAACAGgttagtaatggatggtctctgtttggattgcatgtcttctggaatat--tcagtttacaatacttggctgttctgtttcag
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G059225_T02 (Zea mays), 5'ss of exon 14
GCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTGAGTTCTCAGGCTCCTGAGAGGgtaattagtgcagatgtatgcatgactatttagcctttgatttgtggtcattttgatgactgtatccattatatttcag
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GCAGAGAGTGCAATGGATCAGATGGATTGGATTGAAAAAATTACCGGCGTCATTGCTTCTTTGCTGAGCTCCCAGTCTCCTGAACGAgtaagtgatt--aatgaacattgaattatttacatatggactt-tgatttatgtgacatctgtatt--ttgt-ttacag
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 14
GCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTGAGTTCTCAGGCTCCTGAGAGGgtaattagtgcagatgtatgcatgactatttagcctttgatttgtggtcattttgatgactgtatccatta-----tatt-tcag
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GCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAGATTCCTGATAGGgtaacttccatgaacttttg-gtgatcgtgtagaaataaaatttaagtcaatttgattaatgttgcaatttgcaattgttatcag
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 14
GCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTGAGTTCTCAGGCTCCTGAGAGGgtaattagtgcagatgtatgcatgactatttagcctttgatttgtggtcattttgatgactgtatccattatatttcag
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GCAGAGAGTGCACTGGACCAAATGGACTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAAATTCCTGAAAGGgtaacttccaagaacttttg-gtgatcatgtagaaataaaatttaagtcaatttgattaatgttgcaattgt-tatcag
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 14
GCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTGAGTTCTCAGGCTCCTGAGAGGgtaattagtgcagatgtatgcatgactatttagcctttgatttgtggtca------ttttgatgactgt--atccattatatttcag
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GCTGAGAGTGCACTCGATCAAATGGATTGGATAGAAAAGATCACTGGGGTTATTGCATCACTACTTAGTTCTCAGGTCCCTGAACAGgtaagtattatcattattcctttacctgaccaggctcatattaaataccaatgcaactttggtgattgtccatcggctacatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110724222|gb|EE099871.1|EE099871EST: AGATAACAGGGGTTATTGCTTCATTACTGAGTTCTCAAGCTCCTGAGAGG TGTCTGCCTATTAGTCCAATGGGAAGCAGTCATCACCGCTCTGCAAGTGAG
genomic: AGATAACAGGGGTTATTGCTTCATTACTGAGTTCTCAGGCTCCTGAGAGGgtaattagtg ... tatatttcagTGTCTGCCTATTAGTCCAATGGGAAGCAGTCATCACCGCTCTGCAAGTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTGAGTTCTCAGGCTCCTGAGAGGgtaattagtgcagatgtatgcatgactatttagcctttgatttgtggtcattttgatgactgtatccattatatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG