Sequence
atgc intronic sequence ATGC exonic sequenceAATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATGATATGGGGGCAATTAGCATTATAGCTTCTGATTCACAGGCAATGGGTCGCATCGGAGAGgtttgtgaacccacatttgctttttcttaatgaaattgatgcttgcgatacattttattctcatgaatcattactgattgatttaatatgtctaattacc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: 13114.m00153 (Oryza sativa), 5'ss of exon 17
AATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATGATATGGGGGCAATTAGCATTATAGCTTCTGATTCACAGGCAATGGGTCGCATCGGAGAGgtttgtga-acccacatttgctttttcttaatgaaattgatgcttgcgatacattttattctcatgaatcattactgattgatttaatatgtctaattacc
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AATTCGAGCTGAAACAATAGCTGCTGAGGATATCTTGCATGACATGGGAGCAATCAGTATCATATCATCCGATTCGCAGGCTATGGGGCGCATTGGAGAGgtctgttacattcttatcctaattttgtatttcatggtgaaaattttgacatgtatgtttctatagcttgcacctttgttgacagattatggtta-ccatc
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GRMZM2G461569_T01 (Zea mays), 5'ss of exon 14
AATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATGATATGGGGGCAATTAGCATTATAGCTTCTGATTCACAGGCAATGGGTCGCATCGGAGAGgtttgtgaacccacattt---gctttttcttaatgaaattgatgcttgcgatacattttattctcatgaatcattactgattgatttaatatgtctaattacc
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AATTCGAGCTGAAACAATTGCTGCTGAGGACATATTGCATGACATGGGAGCCATAAGTATTATATCATCTGATTCACAGGCCATGGGGCGCGTTGGAGAGgtttg-acacataaatcctaaaaatttcattctcgttattaagaaattacata-gtttttttctcgaaaaacgcaggagaactacgccccat-tatattaaga
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA11G37250.1 (Glycine max), 5'ss of exon 15
AATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATGATATGGGGGCAATTAGCATTATAGCTTCTGATTCACAGGCAATGGGTCGCATCGGAGAGgt---ttgtgaacccacatttgctttttcttaatgaaattgatgcttgcgatacattttattctcatgaatcattactgattgatttaatatgtctaattacc----
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AATAAGAGCTGAAACAATTGCTGCTGAAGATATTTTACATGACAAGGGGGCAATTAGCATTATATCATCTGATTCACAGGCTATGGGTCGAATTGGAGAGgtccttccttaacccaagccagcccatctgtattagacttaat---tgtgctcgtatttattatgaaaaa--attg--aattagtgtgctaagtgccaatgcctgtg
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA05G27840.1 (Glycine max), 5'ss of exon 14
AATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATGATATGGGGGCAATTAGCATTATAGCTTCTGATTCACAGGCAATGGGTCGCATCGGAGAGgtttgtgaacccacatttgctttttcttaatgaaattgatgcttgcgatacattttattctcatgaatcattactgattgatttaatatgtctaat-tacc--
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GATAAGAGAAGGAACGATTGCTGCCGAAGATATTTTGCATGATATTGGGGCAATTAGCATCATATCTTCTGATTCTCAGGCTATGGGTCGAGTTGGAGAGgttttt--attcaagctcggccatctaaatatgattttcttcctgactcacctttattatatatgaaaaatgaaaaaataaat-agggtgcttcatacatttg
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA08G10850.1 (Glycine max), 5'ss of exon 16
AATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATGATATGGGGGCAATTAGCATTATAGCTTCTGATTCACAGGCAATGGGTCGCATCGGAGAGgtttgtgaacccacatttgctttttcttaatgaaattgatgcttgcgatacattttattctcatgaatcattactgattgatttaatatgtctaattacc
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-----------------------------------TGCATGATATTGGGGCAATTAGCATTATATCTTCTGATTCACAGGCTATGGGTCGAGTTGGAGAGGTCCTTTA-TTCAAACTCAGCCCATCTACATAAGAT-
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT1G67550.1 (Arabidopsis thaliana), 5'ss of exon 14
AATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATGATATGGGGGCAATTAGCATTATAGCTTCTGATTCACAGGCAATGGGTCGCATCGGAGAGgtttgtgaacccacatttgctttttcttaatgaaattgatgcttgcgatacattttattctcatgaatcattactgattgatttaatatgtctaattacc
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AATAAGAGCTGAAACAATAGCTGCAGAGGATATATTGCATGATATGGGAGCAATCAGCATTATCTCCTCCGACTCACAAGCAATGGGTCGCATTGGAGAGgttcatag-----tatttgaattcttgaattctatatcctttctgtagagatgcttacttt-gtggcatgttctcttttgacag----------------
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: PP1S274_69V6.1 (Physcomitrella patens), 5'ss of exon 14
AATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATGATATGGGGGCAATTAGCATTATAGCTTCTGATTCACAGGCAATGGGTCGCATCGGAGAGgtttgtg-aacccacatttgctttttctta-atgaaattgatgcttgcgatacattttattctcatgaatcattactgattgatttaatatgtctaattacc----------------------------------------
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GATTCGGGGCGAGACGATAGCTGCTGAAGACATTCTTCATGATATGGGGGCCATCAGCATGATGTCCTCTGATTCTCAAGCGATGGGTCGAATTGGCGAGgttctcataaaatttgtttacttctacttgcatctaattgtgtctttttaaagatcttataac--tcaagc-ttgagatttgatctcccatgactggatgcttgacgcaatgaattaatcttttgagaggggctttccgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122688779|gb|EC925600.1|EC925600EST: CAATTAGCATTATAGCTTCTGATTCACAGGCAATGGGTCACATCGGAGAG GTGATAATTAGAACCTGGCAAACTGCTCACAAGATGAAGTTACAAAGAGGA
genomic: CAATTAGCATTATAGCTTCTGATTCACAGGCAATGGGTCGCATCGGAGAGgtttgtgaac ... gttccactagGTGATAATTAGAACCTGGCAAACTGCTCACAAGATGAAGTTACAAAGAGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATGATATGGGGGCAATTAGCATTATAGCTTCTGATTCACAGGCAATGGGTCGCATCGGAGAGgtttgtgaacccacatttgctttttcttaatgaaattgatgcttgcgatacattttattctcatgaatcattactgattgatttaatatgtctaattacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa