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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTGTGAAGGAGTTGTCACGGAAAAGAGTCGGAAAGATGAAACTATGTTAACTGTCCGTATTTCAGgtatgaacaattcttcaacttctgtttcatgaacatttacacacttgttacttggttttaaaaaatgaatttttctctgattcttttgcag

Basic information

species Vitis vinifera
transcript Vv00s0229g00110.t01
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718361|gb|FC066303.1|FC066303
EST:     CACGGAAAAGAGTCGGAAAGATGAAACTATGTTAACTGTCCGTATTTCAG                         CTCAGGGAGAAACATCAGTTGTTAGAGCTTGGCATCTTCGGCCATCTCTCA
genomic: CACGGAAAAGAGTCGGAAAGATGAAACTATGTTAACTGTCCGTATTTCAGgtatgaacaa ... tcttttgcagCTCAGGGAGAAACATCAGTTGTTAGAGCTTGGCATCTTCGGCCATCTCTCA
EST: gi|161709354|gb|FC059683.1|FC059683
EST:     ACAAGAAA-GAGTCGGAAAGATGAAACTATGTAAACTGTCCGTATTTCAG                         CTCAGGGAGAAACATCAGTT
genomic: ACG-GAAAAGAGTCGGAAAGATGAAACTATGTTAACTGTCCGTATTTCAGgtatgaacaa ... tcttttgcagCTCAGGGAGAAACATCAGTT
EST: gi|294966464|gb|GW839571.1|GW839571
EST:     GAAACTATGTTAACTGTCCGTATTTCAG                         CTCAGGGAGAAACATCAGTTGTTAGAGCTTGGCATCTTCGGCCATCTCTCA
genomic: GAAACTATGTTAACTGTCCGTATTTCAGgtatgaacaa ... tcttttgcagCTCAGGGAGAAACATCAGTTGTTAGAGCTTGGCATCTTCGGCCATCTCTCA
EST: gi|34542799|gb|CF511031.1|CF511031
EST:     CACGGAAAAGAGTCGGAAAGATGAAACTATGTTAACTGTCCGTATTTCAG                         CTCAGGGAGAAACATCAGTTGTTAGAGCTTGGCATCTTCGGCCATCTCTCA
genomic: CACGGAAAAGAGTCGGAAAGATGAAACTATGTTAACTGTCCGTATTTCAGgtatgaacaa ... tcttttgcagCTCAGGGAGAAACATCAGTTGTTAGAGCTTGGCATCTTCGGCCATCTCTCA
EST: gi|161706430|gb|FC056318.1|FC056318
EST:     ACGGAAAAGAGTCGGAAAGATGAAACCAATGTTAACTGTCCGTATTTCAG                         CTCAGGGAGAAACATCAGTTGTTAGAGCTTGGCATCTTCGGCCATCTCTCA
genomic: ACGGAAAAGAGTCGGAAAGATGAAACTA-TGTTAACTGTCCGTATTTCAGgtatgaacaa ... tcttttgcagCTCAGGGAGAAACATCAGTTGTTAGAGCTTGGCATCTTCGGCCATCTCTCA
EST: gi|110691518|gb|EE069708.1|EE069708
EST:     CACGGAAAAGAGTCGGAAAGATGAAACTATGTTAACTGTCCGTATTTCAG                         CTCAGGGAGAAACATCAGTTGTTAGAGCTTGGCATCTTCGGCCATCTCTCA
genomic: CACGGAAAAGAGTCGGAAAGATGAAACTATGTTAACTGTCCGTATTTCAGgtatgaacaa ... tcttttgcagCTCAGGGAGAAACATCAGTTGTTAGAGCTTGGCATCTTCGGCCATCTCTCA
EST: gi|34542883|gb|CF511115.1|CF511115
EST:     CACGGAAAAGAGTCGGAAAGATGAAACTATGTTAACTGTCCGTATTTCAG                         CTCAGGGAGAAACATCAGTTGTTAGAGCTTGGCATTTTCGGCCATCTCTCA
genomic: CACGGAAAAGAGTCGGAAAGATGAAACTATGTTAACTGTCCGTATTTCAGgtatgaacaa ... tcttttgcagCTCAGGGAGAAACATCAGTTGTTAGAGCTTGGCATCTTCGGCCATCTCTCA
EST: gi|110713658|gb|EE089772.1|EE089772
EST:     CACGGAAAAGAGTCGGAAAGATGAAACTATGTTAACTGTCCGTATTTCAG                         CTCAGGGAGAAACATCAGTTGTTAGAGCTTGGCATCTTCGGCCATCTCTCA
genomic: CACGGAAAAGAGTCGGAAAGATGAAACTATGTTAACTGTCCGTATTTCAGgtatgaacaa ... tcttttgcagCTCAGGGAGAAACATCAGTTGTTAGAGCTTGGCATCTTCGGCCATCTCTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGGTGTGAAGGAGTTGTCACGGAAAAGAGTCGGAAAGATGAAACTATGTTAACTGTCCGTATTTCAGgtatgaacaattcttcaacttctgtttcatgaacatttacacacttgttacttggttttaaaaaatgaatttttctctgattcttttgcag

- - - - - - - - - - - - - - - - -  AAGATG