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TTACCAAGCAGGATGAGGGTCTGGTTTCTGGTATTCGGGGGATAGAGTGGGATGCTGTTGAATTACCTTCTCAATTCATGGAAAATTGGTGTTACCACAGgtacttttctaaccaaagtcttatttataatcctcactgatcttttctgctgttcccagattacaacgtggttattttgctccaagagaataatggatct...
species | Vitis vinifera |
transcript | Vv00s0211g00060.t01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TCATGGAAAATTGGTGTTACCACAG GGATACTTTGATGAGCATCGCTAAGCACTATGAAACTGGAGAAACACTACCEST: gi|33408872|gb|CF214499.1|CF214499
genomic: TCATGGAAAATTGGTGTTACCACAGgtacttttct ... gttgctgcagGGATACTTTGATGAGCATCGCTAAGCACTATGAAACTGGAGAAACACTACC
EST: GATGCTGTTGAATTACCTTCTCAATTCATGGAAAATTGGTGTTACCACAG GGATACTTTGATGAGCATCGCTAAGCACTATGAAACTGGAGAAACACTACCEST: gi|71887581|gb|DT036636.1|DT036636
genomic: GATGCTGTTGAATTACCTTCTCAATTCATGGAAAATTGGTGTTACCACAGgtacttttct ... gttgctgcagGGATACTTTGATGAGCATCGCTAAGCACTATGAAACTGGAGAAACACTACC
EST: ATGCTGTTGAATTACCTTCTCAATTCATGGAAAATTGGTG-TACCCACAG GGATACTTTGATGAGCATCGCTAAGCACTATGAAACTGGAGAAACACTACEST: gi|77579724|gb|DV218723.1|DV218723
genomic: ATGCTGTTGAATTACCTTCTCAATTCATGGAAAATTGGTGTTA-CCACAGgtacttttct ... gttgctgcagGGATACTTTGATGAGCATCGCTAAGCACTATGAAACTGGAGAAACACTAC
EST: GATGCTGTTGAATTACCTTCTCAATTCATGGAAAATTGGTGTTACCACAG GGATACTTTGATGAGCATCGCTAAGCACTATGAAACTGGAGAAACACTACC
genomic: GATGCTGTTGAATTACCTTCTCAATTCATGGAAAATTGGTGTTACCACAGgtacttttct ... gttgctgcagGGATACTTTGATGAGCATCGCTAAGCACTATGAAACTGGAGAAACACTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACCAAGCAGGATGAGGGTCTGGTTTCTGGTATTCGGGGGATAGAGTGGGATGCTGTTGAATTACCTTCTCAATTCATGGAAAATTGGTGTTACCACAGgtacttttctaaccaaagtcttatttataatcctcactgatcttttctgctgttcccagattacaacgtggttattttgctccaagagaataatggatct
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagagaa