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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATGAGGGTTTATGGAGCACTGATGTGGTCACTTGGGAAGGTTCTAAATACTCCTGAGGTTATGCGTGTTTATATTGGgtagattctctatctttataatagttcactgcaacagcagcagcttcagtttatttgtttgttatattgcatgcttttattgctatcctatatttcttta...

Basic information

species Vitis vinifera
transcript Vv19s0090g01130.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA02G46350.1 (Glycine max), 5'ss of exon 13
CTTATGAGGGTTTATGGAGCACTGATGTGGTCACTTGGGAAGGTTCTAAATACTCCTGAGGTTATGCGTGTTTATATTGGgtagattctctatctttataat--agt-tcactgcaacagcagcagcttcagtttatttgtttgttatattgcatgcttttattgctatcctatatttcttta
 | |||||||||||||||||  | |||||||||||||||||||| || || || ||||| || ||||| || ||||||||||   |   |  |||  ||  |  ||| |             |  | ||  |   ||     | |  |  ||||  |   | ||   |   | | ||| |   
TTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGGgtgtgtatccactctcaatgttcaagtgttgtctttgttatggagggttggggagatactgctttgtttctgcagtcaagttttttgagtttctcttttt---

upper sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT3G20290.2 (Arabidopsis thaliana), 5'ss of exon 13
CTTATGAGGGTTTATGGAGCACTGATGTGGTCACTTGGGAAGGTTCTAAATACTCCTGAGGTTATGCGTGTTTATATTGGgtagat-tctctatctttataatagttcactgcaacagcagcagcttcagtttatttgtttgttatattgcatgcttttattgctatcctatatttcttta-----
|| |||||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||||    ||||| || |||||||| |  |  || | | |  ||    | || |          |  |  |     ||||     || | || ||| ||| ||  |  |  |   || ||||      
CTAATGAGGGTATATGGAGCTCTCATGTGGTCACTTGGGAAAGTTCTCAATACTCCTGAGGTCTCTCGTGTCTACATTGGgtaaacatacctgtttcttcaactagtgacagtgttttgcttatataaaagcggtttgaa-actaaaatgtatgttttgatgtccttgtttacttgctttgaacag