Sequence
atgc intronic sequence ATGC exonic sequenceCTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCTTTGTTAAGGATATCCTCAGgtattataaactgattgactgtccctaaattctcctatcttctctgcatgtgttttcatctgaatgctgtgctcagaccaccgaaaagccttgaaatgtttcccttcctttttttgttgctgttttataacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 13
CTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCTTTGTTAAGGATATCCTCAGgtattataaactgatt-gactgtccctaaattctcctatcttctctgcatgtgttttcatctgaatgctgtgctcagaccaccgaaaagccttgaaatgtttcccttcctttttttgttgctgttttataacag
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CTGAGCATGTTCTTCCATTGCTTATACCCCTGCTGACTGCTCAACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatattttcttttttaaaaaaaattaagcccctctattttttgt-tatctgtcttcctc-----attgtcctta-atctctgacaaacttctctttaattttttttttgaactttgtgct-ctgtacag---
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 13
CTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCTTTGTTAAGGATATCCTCAGgtattataaactgattgactgtccctaaattctcctatcttctctgcatgtgttttcatctgaatgctgtgctcagaccaccgaaaagccttgaaatgtttcccttcctttttttgttg-ctgttttata-acag
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CTGAGCATCTTCTTCCATTGCTTATGCCCCTGCTGACTGCTCCACAATTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaattt---ttttttaaataattcttaaccccctcattttttttatttattttctgtctttctcattgtcctt-gatctctgacaaacttctcttttttttttttttttaaaaaaaaaactgtgttctgtatag
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 13
CTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCTTTGTTAAGGATATCCTCAGgtattataaactgattgactgtccctaaattctcctatcttctctgcatgtgttttcatctgaatgctgtgctcagaccaccgaaaagccttgaaatgtttcccttcctttttttgttgctgttttataacag
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CAGAACACGTACTTCCCCTGATTATACCACTTCTCACTGCCCAACAATTGAATGTCCAACAGTTTGCCAAATATATTCTATTTGTCAAAGATATTCTCAGgtat----------------acctccgaccaatcctgtcctgtttccaagt--tcttattccccttataactgcatactgttgtaattgttttcaacatctggtttgtctatcctctggtcactgaacag---
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 13
CTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCTTTGTTAAGGATATCCTCAGgtattataaactgattgactgtccctaaattctcctatcttctctgcatgtgttttcatctgaatgctgtgctcagaccaccgaaaagccttgaaatgtttcccttcctttttttgttgctgttttataacag
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CAGAACATGTGCTTACCCTGATGATGCCGCTTCTCACTGCCCAACAACTGAACGTCCAACAGTTTGCCAAATATATGCTATTTGTCAAGGATATTCTCAGgtgtgc--atcttgttatcagtcagta-----------cttttgaata-gtgttttcac-----------gtccgtaccac--aacagtgttgt--tgtctttattgtgatttgtattcatctattgtaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110690072|gb|EE066849.1|EE066849EST: CATGCTCTTTGTTAAGGATATCCTCAG GAAGATTGAAGAAAAACGAGGGGTTACCTTAACTGATTCTGGAATGCCACA
genomic: CATGCTCTTTGTTAAGGATATCCTCAGgtattataaa ... tttataacagGAAGATTGAAGAAAAACGAGGGGTTACCTTAACTGATTCTGGAATGCCACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCTTTGTTAAGGATATCCTCAGgtattataaactgattgactgtccctaaattctcctatcttctctgcatgtgttttcatctgaatgctgtgctcagaccaccgaaaagccttgaaatgtttcccttcctttttttgttgctgttttataacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG