Sequence
atgc intronic sequence ATGC exonic sequenceAGCTGAGGAGCCGAATTGTTGCAGAGCAATCTATAATTAAGTGGTCTCATATGATTGAACAAATGGAAGATCAAGTTGCTGCCATTCTCCAGGAAGAGAGgtttttattgtatttcattgtcaagttgtttccactaattttactgttttgtatttaaattacaagttttggatttgtgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA18G11950.1 (Glycine max), 5'ss of exon 13
AGCTGAGGAGCCGAATTGTTGCAGAGCAATCTATAATTAAGTGGTCTCATATGATTGAACAAATGGAAGATCAAGTTGCTGCCATTCTCCAGGAAGAGAGgtttttattgtatttcattgtcaagttgtttccactaattttactgttttgtatttaaattacaagt-tttggatttgtgcag--------
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AGCTGAAAAGCCGCATTGTTGCCGAGCAATCTATACATAAGTGGTCTCATATAATTGAGCAAATGGAAGACCAAATTTCTGAAGTACTTCAAGAAGAGAGgttttgattatattttattggggcttcattctttttcatttttcactttctttttattattatatttatttatattttcaatttatttcag
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA09G15220.1 (Glycine max), 5'ss of exon 12
AGCTGAGGAGCCGAATTGTTGCAGAGCAATCTATAATTAAGTGGTCTCATATGATTGAACAAATGGAAGATCAAGTTGCTGCCATTCTCCAGGAAGAGAGgtttttattgtatttcattgtcaag----ttgtttccactaattttactgttttgtatttaaatta---caagttttggatttgtg-cag
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AGCTGAAAAGCCGCATTGTTGCTGAGCAATCTATACATAAGTGGTCTCATATAATTGAGCAAATGGAAGACCAAATTTCTGAAGTACTTCATGAAGAGAGgttttgattttatatagttgctaaggcttcatttttttttcatttttcagttttttttttgtatttatttatattttcaatttatttcag
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA02G25240.1 (Glycine max), 5'ss of exon 13
AGCTGAGGAGCCGAATTGTTGCAGAGCAATCTATAATTAAGTGGTCTCATATGATTGAACAAATGGAAGATCAAGTTGCTGCCATTCTCCAGGAAGAGAGgtttttattgtatttcattgtcaag---ttgtttccactaatttt--actgttttgtatttaaatta---caagttttggatttgtg-cag
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AGCTGAAAAGCCGTATTGTTGCTGAGCAATCTATACATAAGTGGTCTCATATAATTGAGCAAATGGAAGACCAAATTTCTGAAGTACTTCATGAAGAGAGgttttgattttatatagttgctaaggcttcatttttttcatttttcagtttctttttttttgtatttatttatattttcaatttatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349812869|gb|FQ410511.1|FQ410511EST: ATGATTGAACAAATGGAGGATCAAGTTGCTGCCATTCTCCAGGAAGAGAG GGAAGAGAGAATCCTCAGAAAAGCTGAAATGGAAGCAACAAAG
genomic: ATGATTGAACAAATGGAAGATCAAGTTGCTGCCATTCTCCAGGAAGAGAGgtttttattg ... atttgtgcagGGAAGAGAGAATCCTCAGAAAAGCTGAAATGGAAGCAACAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCTGAGGAGCCGAATTGTTGCAGAGCAATCTATAATTAAGTGGTCTCATATGATTGAACAAATGGAAGATCAAGTTGCTGCCATTCTCCAGGAAGAGAGgtttttattgtatttcattgtcaagttgtttccactaattttactgttttgtatttaaattacaagttttggatttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA