1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCTTTGCATGAAGCTTTAATGAGACAAGAAGAACTTCTTGCATACATAGACAGGCAAGAAGAAGCCAAGTCCCAGgtaaatttcaaaaaaaataaaataaacagaatctgtcatcaaagatcaatttggcttctgttttccttgcgttcatgaaccaatgattatatttgaatgtgtctgaagcag
species | Vitis vinifera |
transcript | Vv18s0001g12950.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AAGAAGAACTTCTTGCATACATAGACAGGCAAGAAGAAGCCAAGTCCCAG AAAAAGAAGTTTTGTTGGTGAAGAAGAGATTGCTGCAGAGGACCACTTGTTEST: gi|33407676|gb|CF213303.1|CF213303
genomic: AAGAAGAACTTCTTGCATACATAGACAGGCAAGAAGAAGCCAAGTCCCAGgtaaatttca ... tctgaagcagAAAAAGAAGTTTTGTTGGTGAAGAAGAGATTGCTGCAGAGGACCACTTGTT
EST: AAGAAGAACTTCTTGCATACATAGACAGGCAAGAAGAAGCCAAGTCCCAG AAAAAGAAGTTTTGTTGGTGAAGAAGAGATTGCTGCAGAGGACCACTTGTTEST: gi|30130561|gb|CB915900.1|CB915900
genomic: AAGAAGAACTTCTTGCATACATAGACAGGCAAGAAGAAGCCAAGTCCCAGgtaaatttca ... tctgaagcagAAAAAGAAGTTTTGTTGGTGAAGAAGAGATTGCTGCAGAGGACCACTTGTT
EST: GCCAAGTCCCAG AAAAAGAAGTTTTGTTGGTGAAGAAGAGATTGCTGCAGAGGACCACTTGTT
genomic: GCCAAGTCCCAGgtaaatttca ... tctgaagcagAAAAAGAAGTTTTGTTGGTGAAGAAGAGATTGCTGCAGAGGACCACTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTGCATGAAGCTTTAATGAGACAAGAAGAACTTCTTGCATACATAGACAGGCAAGAAGAAGCCAAGTCCCAGgtaaatttcaaaaaaaataaaataaacagaatctgtcatcaaagatcaatttggcttctgttttccttgcgttcatgaaccaatgattatatttgaatgtgtctgaagcag
- - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC