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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGGCAGAGAATTTCGTGAACGGCTTTTAGGACGCTGGGGAATTGTTGATGTCAACGACTGTTGCAGTTGCGCTAAATTTTTGgtaattatttccaagtttgtaatggatgactatgttaagtgatcattcaaatcacggtaatattcatttgatgtctag

Basic information

species Vitis vinifera
transcript Vv18s0001g11150.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g11150.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA08G42730.1 (Glycine max), 5'ss of exon 13
GTTATGGCAGAGAATTTCGTGAACGGCTTTTAGGACGCTGGGGAATTGTTGATGTCAACGACTGTTGCAGTTGCGCTAAATTTTTGgtaa----ttatttccaagtttgtaatggatgactatgttaagtgatcat--tcaaatcacggtaatattcatttgatgtctag-----
|||||||||| || || || ||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||| || | || |||||||     ||||||  || ||| |  |  ||   | ||     ||    |  |  ||    ||| ||||  || | || |||       
GTTATGGCAGGGAGTTCCGAGAACGGCTTTTGGGACGATGGGGAATAGTTGATGTCAATGACTGTTGTAGTTGTGCAACATATTTGgtatatttttatttttaatttttttcta-atatttgtggctgatggatgtggtataagagtggttatatg-atataatctcttatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110386770|gb|EC951392.1|EC951392
EST:     GCTGGGGAATTGTTGATGTCAACGACTGTTGCAGTTGCGCTAAATTTTTG                         GTGGATAGTGGAAAGGTAGATGGAAAACGGCTATGCGCAACTGGTGGTTCA
genomic: GCTGGGGAATTGTTGATGTCAACGACTGTTGCAGTTGCGCTAAATTTTTGgtaattattt ... tgatgtctagGTGGATAGTGGAAAGGTAGATGGAAAACGCCTATGCGCAACTGGTGGTTCA
EST: gi|30124740|gb|CB910079.1|CB910079
EST:     GCTGGGGAATTGTTGATGTCAACGACTGTTGCAGTTGCGCTAAATTTTTG                         GTGGATAGTGGAAAGGTAGATGGAAAACGGCTATGCGCAACTGGTGGTTCA
genomic: GCTGGGGAATTGTTGATGTCAACGACTGTTGCAGTTGCGCTAAATTTTTGgtaattattt ... tgatgtctagGTGGATAGTGGAAAGGTAGATGGAAAACGCCTATGCGCAACTGGTGGTTCA
EST: gi|33406811|gb|CF212438.1|CF212438
EST:     GCTGGGGAATTGTTGATGTCAACGACTGTTGCAGTTGCGCTAAATTTTTG                         GTGGATAGTGGAAAGGTAGATGGAAAACGGCTATGCGCAACTGGTGGTTCA
genomic: GCTGGGGAATTGTTGATGTCAACGACTGTTGCAGTTGCGCTAAATTTTTGgtaattattt ... tgatgtctagGTGGATAGTGGAAAGGTAGATGGAAAACGCCTATGCGCAACTGGTGGTTCA
EST: gi|110359883|gb|EC922159.1|EC922159
EST:     CAACGACTGTTGCAGTTGCGCTAAATTTTTG                         GTGGATAGTGGAAAGGTAGATGGAAAACGGCTATGCGCAACTGGTGGTTCA
genomic: CAACGACTGTTGCAGTTGCGCTAAATTTTTGgtaattattt ... tgatgtctagGTGGATAGTGGAAAGGTAGATGGAAAACGCCTATGCGCAACTGGTGGTTCA