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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCGTCCCATAGAGTTCATGTAACCTGTGCTTTGGTCTATGGTCCAAGTCCCACAGGCAGAATTCACAAAGGGGTGTGTTCAACCTGGATGAAGgtagtactgaagtattaaatatgttgcttttggtcaaatttttctgtctgtttgtttactttagtatttattccagatggcatacgacttaacttcttacagaatctaacttccatttttatcaattaaaatcag

Basic information

species Vitis vinifera
transcript Vv18s0001g07630.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA06G10180.2 (Glycine max), 5'ss of exon 13
GTATGCGTCCCATAGAGTTCATGTAACCTGTGCTTTGGTCTATGGTCCAAGTCCCACAGGCAGAATTCACAAAGGGGTGTGTTCAACCTGGATGAAGgtagtactgaagtattaa----------atatgttgcttttggtcaaatttttctgtctgtttgtttact--ttagtatttattccagatggcatacgacttaacttcttacagaatctaac----ttccatttttatcaattaaaatcag------------
|| |||  | || || || ||||| || ||||| ||||| |||||||||| |||||| || |||||||||||||| || ||||||||||||||||||||||  ||     ||| |          || |  ||||  || |  | | | |  | || ||| ||| |    | ||  |  || |   |  |||    |         | ||  | ||||     ||   || || | || | |||||              
GTTTGCTCCGCAAAGGGTACATGTTACTTGTGCCTTGGTGTATGGTCCAACTCCCACTGGTAGAATTCACAAAGGAGTATGTTCAACCTGGATGAAGgtagctctatgcaattgatacacttgcaatcttatgctcctgtttcattatcttggactcttttttttccaacttgtcatgcttgcgattttcatctctccccgaggggtgcaatacctaatcagtttatgttgtttttaacttaaatctctcttatgatcag

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA04G10200.1 (Glycine max), 5'ss of exon 13
GTATGCGTCCCATAGAGTTCATGTAACCTGTGCTTTGGTCTATGGTCCAAGTCCCACAGGCAGAATTCACAAAGGGGTGTGTTCAACCTGGATGAAGgtagtactgaagtattaa-atatgttgcttttggtcaaatttttctgtct---gtttgtttactttagtatttattccagatg-gcatacgactta-acttct----------tacagaatctaa----cttccatttttatcaattaaaatcag------------
|| |||  | || || || ||||| || ||||| ||||| |||||||||| |||||| || |||||||||||||| || |||||||||||||||||||||| | |     ||| | | |  |  |||    ||  ||  | |||| |     |  || ||| |  | |||   |  |    || |  || ||  |  |||          | ||  | ||||     ||   || ||   || | |||||              
GTTTGCTCCGCAAAGGGTACATGTTACTTGTGCCTTGGTGTATGGTCCAACTCCCACTGGTAGAATTCACAAAGGAGTATGTTCAACCTGGATGAAGgtagcaatatgcaattgatacacttcacttgcaatcttatgctcctgtttcaaaatccttgactctcttttttcaacttgtcatgcttgtgattttcatctctccccgaggggtgcaatacctaatcattttatgttgtttctaacttaaatctctcttatgaccag

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA02G37850.1 (Glycine max), 5'ss of exon 13
GTATGCGTCCCATAGAGTTCATGTAACCTGTGCTTTGGTCTATGGTCCAAGTCCCACAGGCAGAATTCACAAAGGGGTGTGTTCAACCTGGATGAAGgtagta----ctgaagtattaaatatgttgcttttgg--tcaaatttttctgtctgtttgtttactttagtatttattccagatggcatacgacttaacttcttacagaatctaacttccatttttatcaattaaaatcag
|| | | || || || || |||||||| ||||| ||||| | |||||||| ||| ||||| |||||||||||||| || |||||||||||||||||||||  |     ||| | ||| | | ||| ||| |     ||   |||   |||||     | |  |||  || |  ||  |         | | | ||  | |||    |||| || |  || | |   |||||   ||||
GTTTTCCTCGCAAAGGGTACATGTAACTTGTGCCTTGGTATGTGGTCCAACTCCTACAGGAAGAATTCACAAAGGAGTATGTTCAACCTGGATGAAGgtatcaacttttgatggattcactttgt-gctatcaaattcttgtttcaatgtcttggactcttttttcataatctttgtatgaatttccccaatcaagct-ttattatatctgacctgaatctct-caaatta---tcag

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA14G36070.1 (Glycine max), 5'ss of exon 13
GTATGCGTCCCATAGAGTTCATGTAACCTGTGCTTTGGTCTATGGTCCAAGTCCCACAGGCAGAATTCACAAAGGGGTGTGTTCAACCTGGATGAAGgtagtactgaagtattaaatatgttgcttttggtcaaatttttctgtc----tgtttgtttactttagtatttattccagatggcatacgactt---aacttcttacagaatctaacttccatttttatcaattaaaatcag------------------
|| | |  | || |  || |||||||| ||||| ||||| | |||||||| ||| || || |||||||||||||| || |||||||||||||||||||||  |      |  |  ||   ||   ||   ||||||| || | ||    | || |  |  |||   ||    |     ||   | |  | |    | | ||  ||    ||||  || |  ||||| |  |  || | |                  
GTTTTCCCCGCAAAAGGTGCATGTAACTTGTGCCTTGGTATGTGGTCCAACTCCTACTGGAAGAATTCACAAAGGAGTATGTTCAACCTGGATGAAGgtatcaacttt-tgatggattcattttgttctatcaaattcttgtttcaacgtcttggactcttttttcataatctttgtgtgaatttcccccttctgagtgctcgcaattgctaa--tcaagctttattatatgtaacctgaatctctcaaattatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27584661|gb|CB007356.1|CB007356
EST:     CAAGTCCCACAGGCAGAATTCACAAAGGGGTGTGTTCAACCTGGATGAAG                         AATGCAGTTTCTTTAGAGAAAAGCCATAACTCTAGCTGGGCTCCTATTTTT
genomic: CAAGTCCCACAGGCAGAATTCACAAAGGGGTGTGTTCAACCTGGATGAAGgtagtactga ... ttaaaatcagAATGCAGTTTCTTTAGAGAAAAGCCATAACTCTAGCTGGGCTCCTATTTTT
EST: gi|30125286|gb|CB910625.1|CB910625
EST:     GTTCAACCTGGATGAAG                         AATGCAGTTTCTTTAGAGAAAAGCCATAACTCTAGCTGGGCTCCTATTTTT
genomic: GTTCAACCTGGATGAAGgtagtactga ... ttaaaatcagAATGCAGTTTCTTTAGAGAAAAGCCATAACTCTAGCTGGGCTCCTATTTTT