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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAAAATTGAAAAGATTGCTGGCAGTTCTCAATATTTTCTTTTGCACCTATGTACCCAGgtacttaattttgcatctgctttatcaaatatttgctggatactgactattttcgagttttatgcttaaggaaagaacctggctagactactttgagtcctatggttagccttttatgttcactttttggaattagtaaaatactaatggtgatattcaaaatgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g00500.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g00500.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA14G39890.1 (Glycine max), 5'ss of exon 13
GATGAAAATTGAAAAGATTGCTGGCAGTTCTCAATATTTTCTTTTGCACCTATGTACCCAGgtacttaattttgcatctgctttatcaaatattt-gctggatactgact--attttcgagttttatgcttaaggaaagaacctggctagactactttgagtcctatggttagccttttatgttcactttttggaattagtaaaatactaatggtgatattcaaaatgcag
||||||||  || |  ||||| || ||||| |||||||||||||||||||||||||| |||||| |   | ||| ||   || |  || ||||   | |  | | |||||  || ||   |||||| | || |  |      ||  ||  ||  ||    | || |                                                                 
GATGAAAACAGAGACAATTGCGGGAAGTTCCCAATATTTTCTTTTGCACCTATGTACACAGgtatt--gtcttgtattatctcttacatatataaagtttcacagtgactgaatcttatggttttaagttttaacacca---ctaactttacagctccatgcccca-----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402290|gb|CF207917.1|CF207917
EST:     AAAAGATTGCTGGCAGTTCTCAATATTTTCTTTTGCACCTATGTACCCAG                         GCTGGAACATATATCAAGGAATTTGTTCACGGTGATCTTGGACGCACCCAT
genomic: AAAAGATTGCTGGCAGTTCTCAATATTTTCTTTTGCACCTATGTACCCAGgtacttaatt ... caaaatgcagGCTGGAACATATATCAAGGAATTTGTTCACGGTGATCTTGGACGCACCCAT
EST: gi|71869385|gb|DT018440.1|DT018440
EST:     AAAAGATTGCTGGCAGTTCTCAATATTTTCTTTTGCACCTATGTACCCAG                         GCTGGAACATATATCAAGGAATTTGTTCACGGTGATCTTGGACGCACCCAT
genomic: AAAAGATTGCTGGCAGTTCTCAATATTTTCTTTTGCACCTATGTACCCAGgtacttaatt ... caaaatgcagGCTGGAACATATATCAAGGAATTTGTTCACGGTGATCTTGGACGCACCCAT
EST: gi|33402370|gb|CF207997.1|CF207997
EST:     AAAAGATTGCTGGCAGTTCTCAATATTTTCTTTTGCACCTATGTACCCAG                         GCTGGAACATATATCAAGGAATTTGTTCACGGTGATCTTGGACGCACCCAT
genomic: AAAAGATTGCTGGCAGTTCTCAATATTTTCTTTTGCACCTATGTACCCAGgtacttaatt ... caaaatgcagGCTGGAACATATATCAAGGAATTTGTTCACGGTGATCTTGGACGCACCCAT