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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAACTTGCTGCTAGACGCTTCCAGAAGCCTAAAAAGGGGTCAAAACCTGATGGCTCCGATGATAATGGTGATGTACCTGCTGTGGATATGCGCTCCAAgtatgtcattacctctttgggcttttgtcacattttctagttgaaagataacacggtcaatttttctgagtgttaatatgttccttttgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g04200.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA17G13080.2 (Glycine max), 5'ss of exon 13
CAAAACTTGCTGCTAGACGCTTCCAGAAGCCTAAAAAGGGGTCAAAACCTGATGGCTCCGATGATAATGGTGATGTACCTGCTGTGGATATGCGCTCCAAgtatgtcattacctctttgggcttttgtcacattttctagttgaaagataacacggtcaatttttctgagtgttaatatgttccttttgcag
|||| ||||||||||||||||| |||||||| || || || | ||||| |||||| || ||||||||||||||||| ||| |  |||||||||| || |||||    | ||  | |     | ||| ||   |||| |  |     | |       |  | ||| ||||   ||  | ||||    | ||||
CAAAGCTTGCTGCTAGACGCTTTCAGAAGCCCAAGAAAGGTTTAAAACTTGATGGGTCTGATGATAATGGTGATGTGCCTTCCATGGATATGCGTTCAAAgtaaa--aataagttt-----cctttctctttttttttcatctgtggttgttgtctttgagttt-ctgacaatttctctgtta---tggcag

upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA05G07920.1 (Glycine max), 5'ss of exon 13
CAAAACTTGCTGCTAGACGCTTCCAGAAGCCTAAAAAGGGGTCAAAACCTGATGGCTCCGATGATAATGGTGATGTACCTGCTGTGGATATGCGCTCCAAgtatgtcattacctctttgggcttttgtcacattttctagttgaaagataacacggtcaatttttctgagtgttaatatgttccttttgcag
|||| ||||| ||||| ||||| |||||||| || || || | ||||| ||||||||| ||||||||||||||||| ||| |  ||||||||||||  ||||||   || |  |   |    ||||       ||| |  ||    | |       |  | ||| ||||   ||  | ||||    | ||||
CAAAGCTTGCCGCTAGGCGCTTTCAGAAGCCCAAGAAAGGTTTAAAACTTGATGGCTCTGATGATAATGGTGATGTGCCTTCCATGGATATGCGCTTGAAgtataa-atcagtttcctatcatttt------ctttttcattcgtggttgttgtcattgagttt-ctgacaatttctctgtta---tggcag