1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TTGGGTTCACTCCAACAACGCCTCTTTACCCCACGAAATCAGATCAATGCCTCCATCACAGCTCTATGAAATCCTTACTCAGAACTCTATGCCAACTCAGgtttcccctttgtttcaatctcccttcataaattgccttctactttgcttagtttgtgtttgaagttgtgaagtttatacctttggattccaaaagatct...
species | Vitis vinifera |
transcript | Vv17s0000g01390.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTCCATCACAGCTCTACGAAATCCTTACTCAGAACTCTATGCCAACTCAG GAAAAAGATACTAATCCGGGCGATAATCCTGCCCGATTTCAACGTACTGATEST: gi|110693305|gb|EE069430.1|EE069430
genomic: CTCCATCACAGCTCTATGAAATCCTTACTCAGAACTCTATGCCAACTCAGgtttcccctt ... actgtggcagGAAAAAGATACTAATCCAGGCGATAATCCTGCCCGATTTCAACGTACTGAT
EST: CTCCATCACAGCTCTACGAAATCCTTACTCAGAACTCTATGCCAACTCAG GAAAAAGATACTAATCCGGGCGATAATCCTGCCCGATTTCAACGTACTGATEST: gi|110715877|gb|EE094430.1|EE094430
genomic: CTCCATCACAGCTCTATGAAATCCTTACTCAGAACTCTATGCCAACTCAGgtttcccctt ... actgtggcagGAAAAAGATACTAATCCAGGCGATAATCCTGCCCGATTTCAACGTACTGAT
EST: CTCCATCACAGCTCTATGAAATCCTTACTCAGAACTCTATGCCAACTCAG GAAAAAGATACTAATCCAGGCGATAATCCTGCCCGATTTCAACGTACTGATEST: gi|110386523|gb|EC951123.1|EC951123
genomic: CTCCATCACAGCTCTATGAAATCCTTACTCAGAACTCTATGCCAACTCAGgtttcccctt ... actgtggcagGAAAAAGATACTAATCCAGGCGATAATCCTGCCCGATTTCAACGTACTGAT
EST: CTCCATCACAGCTCTACGAAATCCTTACTCAGAACTCTATGCCAACTCAG GAAAAAGATACTAATCCGGGCGATAATCCTGCCCGATTTCAACGTACTGATEST: gi|351027836|gb|FQ448406.1|FQ448406
genomic: CTCCATCACAGCTCTATGAAATCCTTACTCAGAACTCTATGCCAACTCAGgtttcccctt ... actgtggcagGAAAAAGATACTAATCCAGGCGATAATCCTGCCCGATTTCAACGTACTGAT
EST: CTCCATCACAGCTCTACGAAATCCTTACTCAGAACTCTATGCCAACTCAG GAAAAAGATACTAATCCGGGCGATAATCCTGCCCGATTTCAACGTACTGATEST: gi|37187323|gb|CF606676.1|CF606676
genomic: CTCCATCACAGCTCTATGAAATCCTTACTCAGAACTCTATGCCAACTCAGgtttcccctt ... actgtggcagGAAAAAGATACTAATCCAGGCGATAATCCTGCCCGATTTCAACGTACTGAT
EST: CTCCATCACAGCTCTATGAAATCCTTACTCAGAACTCTATGCCAACTCAG GAAAAAGATACTAATCCAGGCGATAATCCTGCCCGATTTCAACGTACTGATEST: gi|26261768|gb|CA812831.1|CA812831
genomic: CTCCATCACAGCTCTATGAAATCCTTACTCAGAACTCTATGCCAACTCAGgtttcccctt ... actgtggcagGAAAAAGATACTAATCCAGGCGATAATCCTGCCCGATTTCAACGTACTGAT
EST: CTCCATCACAGCTCTACGAAATCCTTACTCAGAACTCTATGCCAACTCAG GAAAAAGATACTAATCCGGGTGATAATCCTGCCCGATTTCAACGTACTGATEST: gi|110701577|gb|EE079309.1|EE079309
genomic: CTCCATCACAGCTCTATGAAATCCTTACTCAGAACTCTATGCCAACTCAGgtttcccctt ... actgtggcagGAAAAAGATACTAATCCAGGCGATAATCCTGCCCGATTTCAACGTACTGAT
EST: CTCCATCACAGCTCTACGAAATCCTTACTCAGAACTCTATGCCAACTCAG GAAAAAGATACTAATCCAGGCGATAATCCTGCCCGATTTCAACGTACTGAT
genomic: CTCCATCACAGCTCTATGAAATCCTTACTCAGAACTCTATGCCAACTCAGgtttcccctt ... actgtggcagGAAAAAGATACTAATCCAGGCGATAATCCTGCCCGATTTCAACGTACTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGGTTCACTCCAACAACGCCTCTTTACCCCACGAAATCAGATCAATGCCTCCATCACAGCTCTATGAAATCCTTACTCAGAACTCTATGCCAACTCAGgtttcccctttgtttcaatctcccttcataaattgccttctactttgcttagtttgtgtttgaagttgtgaagtttatacctttggattccaaaagatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaga