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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCCGGAGTTTGACAGATGTCATAACTTCAATCCTTCAGAGAGTGGGTGATGACATCGATCGCAACAACCTGCCGCAAATTCTGgtacgtgttaaaatccttttttttgtcagtttggttttttagtttctccttatgcctacaaacattaattctatcaatggctacattctatag

Basic information

species Vitis vinifera
transcript Vv17s0000g01200.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA04G37370.3 (Glycine max), 5'ss of exon 12
--------------ATACCCGGAGTTTGACAGATGTCATAACTTCAATCCTTCAGAGAGTGGGTGATGACATCGATCGCAACAACCTGCCGCAAATTCTGgtacgtgttaaaatccttttt---tttgtcagtttggttttttagtttctccttatgcctacaaacattaattctatcaatggctacattctatag
              ||||||||||  |||  || || ||||||||||||||||||||| | |||||||| |||||||  |||||| | || ||||||||||||| | | || |    ||||   ||  | || |||  | | || ||| ||||  | |  |  ||   |     |||  | |  |  |        
GCTTGCAAGTTCAGATACCCGGAGCATGATGGAGGTTATAACTTCAATCCTTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttcaagacgtattttatattcttgaggttgagtgtatattttatcctctt-ctaaggaaagctggccatatttacgattgtag-------

upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA04G37370.1 (Glycine max), 5'ss of exon 13
ATACCCGGAGTTTGACAGATGTCATAACTTCAATCCTTCAGAGAGTGGGTGATGACATCGATCGCAACAACCTGCCGCAAATTCTGgtacgtgttaaaatccttttt---tttgtcagtttggttttttagtttctccttatgcctacaaacattaattctatcaatggctacattctatag
||||||||||  |||  || || ||||||||||||||||||||| | |||||||| |||||||  |||||| | || ||||||||||||| | | || |    ||||   ||  | || |||  | | || ||| ||||  | |  |  ||   |     |||  | |  |  |        
ATACCCGGAGCATGATGGAGGTTATAACTTCAATCCTTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttcaagacgtattttatattcttgaggttgagtgtatattttatcctctt-ctaaggaaagctggccatatttacgattgtag-------

upper sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA06G17720.1 (Glycine max), 5'ss of exon 11
ATACCCGGAGTTTGACAGATGTCATAACTTCAATCCTTCAGAGAGTGGGTGATGACATCGATCGCAACAACCTGCCGCAAATTCTGgtacgtgttaaaatccttttttttgtcagtttg-gttttttagtttctccttatgcctacaaacattaattctatcaatggctacattctatag
||||| ||||  ||||||| || ||||||||| ||||||||||  | |||||||| || ||||  |||||| | || ||||||||||||| | | || |   | | |||| |    ||| | ||    || | |  |     || | ||                               
ATACCTGGAGCATGACAGAGGTTATAACTTCAGTCCTTCAGAGGCTTGGTGATGATATTGATCCTAACAACATACCCCAAATTCTGgtacttttcaagacattatattttatattcttgaggttgagtgtatatgttaccctcttctaag------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110363858|gb|EC927482.1|EC927482
EST:     TTCAGAGAGTGGGTGATGACATCGATCGCAACAACCTGCCGCAAATTCTG                         TATGAAGATGAAGACCATGACAAAGTAGTACTCGCATCAGATAATGATCTT
genomic: TTCAGAGAGTGGGTGATGACATCGATCGCAACAACCTGCCGCAAATTCTGgtacgtgtta ... cattctatagTATGAAGATGAAGACCATGACAAAGTAGTACTCGCATCAGATAATGATCTT
EST: gi|110386824|gb|EC951452.1|EC951452
EST:     TTCAGAGAGTGGGTGATGACATCGATCGCAACAACCTGCCGCAAATTCTG                         TATGAAGATGAAGACCATGACAAAGTAGTACTCGCATCAGATAATGATCTT
genomic: TTCAGAGAGTGGGTGATGACATCGATCGCAACAACCTGCCGCAAATTCTGgtacgtgtta ... cattctatagTATGAAGATGAAGACCATGACAAAGTAGTACTCGCATCAGATAATGATCTT
EST: gi|71889831|gb|DT038886.1|DT038886
EST:     TTCAGAGAGTGGGTGATGACATCGATCGCAACAACCTGCCGCAAATTCTG                         TATGAAGATGAAGACCATGACAAAGTAGTACTCGCATCAGATAATGATCTT
genomic: TTCAGAGAGTGGGTGATGACATCGATCGCAACAACCTGCCGCAAATTCTGgtacgtgtta ... cattctatagTATGAAGATGAAGACCATGACAAAGTAGTACTCGCATCAGATAATGATCTT