Sequence
atgc intronic sequence ATGC exonic sequenceGATGATCCTGAAGACTCTCTTGGCTAAAGAACAAGCCGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctgatggcaatgatgaattgattaagaatcagctgtgttgactcttgggattaacaattgaaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os05g50750.3 (Oryza sativa), 5'ss of exon 12
GATGATCCTGAAGACTCTCTTGGCTAAAGAACAAG---CCGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctgatggcaatgatgaattgattaagaatcagctgtgttgactc--ttgggattaacaattgaaacag----------------------
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---GATCTTAAGGACACTATTGTCAAAAGAGAAGGTTGCTGAAGATATTGATTACAAGGAGCTTGCAACAATGACCGAAGGATACAGTGGAAGCGACCTTAAGgtttgtggattgctttgaacc--tgagttcgt-agtaagcttctgtgttgatagaatctgaatgtatgactgaaactttgtgcctttttttgggtaccag
upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G058491_T01 (Zea mays), 5'ss of exon 12
GATGATCCTGAAGACTCTCTTGGCTAAAGAACAAGCCGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgta-cttctgatggcaatg-------atgaattgattaagaatca----gctgtgttgactcttgggattaacaattgaaacag-------------------------------------------------------------------------------
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CATAATGCGGCGACTTCTGTCAAAGGAGAAAGTTGATGAAGGGCTGGACTTCAAGGAGCTAGCAACCATGACAGAAGGATATAGTGGAAGTGATCTCAAGgtcagtagcatgaaacatgaatgcgcacacatgcccccatgaaaaacaaaggcaccatgctcaacaccgatttatttttctgagaatacgcaagatagttgtgtatctctgtattaagagctaaagtagagatcaattatgctcgacactgaattcttctttaacag
upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G159307_T01 (Zea mays), 5'ss of exon 12
GATGATCCTGAAGACTCTCTTGGCTAAAGAACAAGCCGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctgatggcaatgatgaattgattaagaat---cagctgtgttgactcttg--ggattaacaattgaaacag--------------------------------------
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CATAATGCGGCGACTTCTGTCAAAGGAGAAAGTTGATGAAAGGCTGAACTTCAAGGAGCTAGCAACCATGACAGAAGGATATAGTGGAAGTGATCTCAAGgtcagtaacatgaactctcgatttattttttctgagaatgtgtaagagagctgtgtatcgttgtattgagaactaaagtagagatcaattctgctcgatcctgaattcttctttaacag
upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA20G30360.1 (Glycine max), 5'ss of exon 11
GATGATCCTGAAGACTCTCTTGGCTAAAGAACAAGCCGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctgatggcaatgatgaattgattaagaatcagctgtgttga-ctcttgggattaacaattg-aaacag
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AATGATCTTGAAAACTATCCTAGCTAAGGAAAAATATGAAAATATAGACTTTAAAGAGCTTTCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGgttcaccttgttggttattctaattccttacttct-agtttgtggtgatgatctattgacattaatttctgtaaacag
upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA16G29040.1 (Glycine max), 5'ss of exon 12
GATGATCCTGAAGACTCTCTTGGCTAAAGAACAAGCCGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctgatggcaatgatgaattgattaagaatcagctgtgttgactc-ttgggattaacaattg-aaacag
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AATGATCTTGAAGACTCTTTTGGCTAAAGAAAAACATGAAAATTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGTGATCTAAAGgtg---aattttggtggc---gatttactggttttattttttttgggaaaataaattgatgttaatttctgtgaacag
upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA10G37380.1 (Glycine max), 5'ss of exon 11
GATGATCCTGAAGACTCTCTTGGCTAAAGAACAAGCCGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctgatggcaatgatgaattgattaagaatcagctgtgttga-ctcttgggattaacaattg-aaacag
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AATGATCTTGAAAACTCTCCTAGCTAAGGAAAAATATGAACATATAGACTTTAATGAGCTTTCAACCATTACAGAAGGATATACTGGAAGTGATCTTAAGgttcaccttgttggttattctgattccttacttct-agtttgtggtgatgatctattgacattaatttctgtaaacag
upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA16G29290.1 (Glycine max), 5'ss of exon 4
GATGATCCTGAAGACTCTCTTGGCTAAAGAACAAGCCGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctgatggcaatgatgaattgattaagaatcagctgtgttgactc-ttgggattaacaattg-aaacag
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AATGATCTTGAAGACTCTTTTGGCTAAAGAAAAACATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGgt--gaattt----tgggggcgatttactggttttattttttttgggaaaataaattgatgttaatttctgtgaacag
upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA16G29250.1 (Glycine max), 5'ss of exon 2
GATGATCCTGAAGACTCTCTTGGCTAAAGAACAAGCCGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctgatggcaatgatgaattgattaagaatcagctgtgttgactcttgggattaacaattg-aaacag
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AATGATCTTGAAGACTCTTTTGGCTAAAGAAAAACATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGgtg---aattttggtggcga--gttactcgatttatttttttggggaaaataaattgatgttaatttctgtgaacag
upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA09G23250.1 (Glycine max), 5'ss of exon 12
GATGATCCTGAAGACTCTCTTGGCTAAAGAACAAGCCGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctgatggcaatgatgaattgattaagaatcagctgtgttga-ctcttgggattaacaattg-aaacag
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AATGATCTTGAAGACTCTTTTGGCTAAAGAGAAACATGAAAACTTAGACTTCAAAGAGCTGGCAACCATGACAGAAGGATATACTGGAAGCGATCTTAAGgt--gaattt----tggtggtgatttactggttttatttttttggggaaaatctgttgatgttaatttctgtgaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254915778|gb|GR905209.1|GR905209EST: TTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAATGATCTTAAG AACTTGTGCATGGCAGCAGCTTATCGTCCTGTAAGGGAGCTAGTACAAC
genomic: TTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtactt ... attgaaacagAACTTGTGCATGGCAGCAGCTTATCGTCCTGTAAGGGAGCTAGCACAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGATCCTGAAGACTCTCTTGGCTAAAGAACAAGCCGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGgtttgtacttctgatggcaatgatgaattgattaagaatcagctgtgttgactcttgggattaacaattgaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG