Sequence
atgc intronic sequence ATGC exonic sequenceTCTCTCCACACTGCAGTACAGGGCCCTGACAACTCACCTTTGGAGGTTCAAATAAGGACACAGgtaccacacctacagattccataatctcatgtcaagcttatttctaaatggttttgattcagctaacaataatagttgctttatcttttcagagggaaagaataatcgcgtgtcaagcttatttgtaaatgcttttgatttagctaacaataatagttgctttattttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g02260.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA01G43940.1 (Glycine max), 5'ss of exon 3
TCTCTCCACACTGCAGTACAGGGCCCTGACAACTCACCTTTGGAGGTTCAAATAAGGACACAGgtaccacacctacagattccataatctcatgtcaagcttatttctaaatggttttgattcagctaacaataatagttgctttatcttttcagagggaaagaataatcgcgtgtcaagcttatttgtaaatgcttttgatttagctaacaataatagttgctttattttttcag
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TCCTTGCACACTGCAGTCCAAGGTCCTGACAACTCACCTTTAGAAGTACAAATAAGGACACAGgtgctaagtt-----atttcaca-tgtgttgcagaggttacttgtttata-ttttagttc--ttgatattttcatttattattttgcttgatag-------------------------------------------------------------------------------
upper sequence: Vv16s0039g02260.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA11G01410.1 (Glycine max), 5'ss of exon 3
TCTCTCCACACTGCAGTACAGGGCCCTGACAACTCACCTTTGGAGGTTCAAATAAGGACACAGgtaccacacctacagattccataatctcatgtcaagcttatttctaaatggttttgattcagctaacaataatagttgctttatcttttcagagggaaagaataatcgcgtgtcaagcttatttgtaaatgcttttgatttagctaacaataatagttgctttattttttcag
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TCCTTGCACACTGCAGTCCAAGGTCCTGACAACTCACCTTTAGAAGTACAAATAAGGACACAGgtgccaagtt-----acttcaca-tgtgttgcagaggttactcgtttatt-ttttagttc--ttgatattttcaattattatttttcttgatag-------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71866418|gb|DT015473.1|DT015473EST: CAGTACAGGGCCCTGACAACTCACCTTTGGAGGTTCAAATAAGGACACAG AGGATGCATGAGTATGCGGAACATGGACTTGCTGCACATTGGCTTTATAAA
genomic: CAGTACAGGGCCCTGACAACTCACCTTTGGAGGTTCAAATAAGGACACAGgtaccacacc ... attttttcagAGGATGCATGAGTATGCGGAACATGGACTTGCTGCACATTGGCTTTATAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTCTCCACACTGCAGTACAGGGCCCTGACAACTCACCTTTGGAGGTTCAAATAAGGACACAGgtaccacacctacagattccataatctcatgtcaagcttatttctaaatggttttgattcagctaacaataatagttgctttatcttttcagagggaaagaataatcgcgtgtcaagcttatttgtaaatgcttttgatttagctaacaataatagttgctttattttttcag
- - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - TGGAGG