1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTGTTTGAGGTGGCTCCCTCCTTGCACATGGTGGAGCTTCGGAAAACTGGTGGTGACACACTGGAGTTCCACAAGGCATGCTAAgcatttaaaattcttcatttctttttttcaacaggttcatttataggaagtttgatattaaggaccaatttgcctttttctaattcggtttcccaattctctgaccaaatggcag
species | Vitis vinifera |
transcript | Vv15s0048g02740.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AGCTTCGGAAAACTGGTGGTGACACACTGGAGTTCCAC-A---A-G---- TTCTACAAAAGCTTCTCTTCAGGATTAAAAGATATAGTCTGGAAATCAGAAEST: gi|110374736|gb|EC939660.1|EC939660
genomic: AGCTTCGGAAAACTGGTGGTGACACACTGGAGTTCCACAAGGCATGCTAAgcatttaaaa ... caaatggcagTTCTACAAAAGCTTCTCTTCAGGATTAAAAGATATAGTCTGGAAATCAGAA
EST: AGCTTCGGAAAACTGGTGGTGACACACTGGAGTTCCAC-A---A-G---- TTCTACAAAAGCTTCTCTTCAGGATTAAAAGATATAGTCTGGAAATCAGAAEST: gi|110425521|gb|EC991908.1|EC991908
genomic: AGCTTCGGAAAACTGGTGGTGACACACTGGAGTTCCACAAGGCATGCTAAgcatttaaaa ... caaatggcagTTCTACAAAAGCTTCTCTTCAGGATTAAAAGATATAGTCTGGAAATCAGAA
EST: AGCTTCGGAAAACTGGTGGTGACACACTGGAGTTCCACAAG---T--T-- --CTACAAAAGCTTCTTTTCAGGATTAAAAGATATAGTCTGGAAATCAGAAEST: gi|110732596|gb|EE108031.1|EE108031
genomic: AGCTTCGGAAAACTGGTGGTGACACACTGGAGTTCCACAAGGCATGCTAAgcatttaaaa ... caaatggcagTTCTACAAAAGCTTCTCTTCAGGATTAAAAGATATAGTCTGGAAATCAGAA
EST: AGCTTCGGAAAACTGGTGGTGACACACTGGAGTTCCAC-A---A-G---- TTCTACAAAAGCTTCTCTTCAGGATTAAAAGATATAGTCTGGAAATCAGAA
genomic: AGCTTCGGAAAACTGGTGGTGACACACTGGAGTTCCACAAGGCATGCTAAgcatttaaaa ... caaatggcagTTCTACAAAAGCTTCTCTTCAGGATTAAAAGATATAGTCTGGAAATCAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTTGAGGTGGCTCCCTCCTTGCACATGGTGGAGCTTCGGAAAACTGGTGGTGACACACTGGAGTTCCACAAGGCATGCTAAgcatttaaaattcttcatttctttttttcaacaggttcatttataggaagtttgatattaaggaccaatttgcctttttctaattcggtttcccaattctctgaccaaatggcag
- - - - - - - - - - - - - - - - - - - - - - - TGGTGG