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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTAAGGCCATGCGAGAATCCGATTCTACCAAACCTGCAATTTTTGCAATGTCAAATCCCACCATGAATGgtttgtgttgcaaaccctatcaagcacttacatttatttcaggcagacatatggcctccattgacatttttttctttgcatattctatggtgtag

Basic information

species Vitis vinifera
transcript Vv15s0046g03670.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA09G39870.1 (Glycine max), 5'ss of exon 13
GTGCTTAAGGCCATGCGAGAATCCGATTCTACCAAACCTGCAATTTTTGCAATGTCAAATCCCACCATGAATGgtttgtgt-tgcaaaccctatcaagcacttacatttatttca-ggcagacatatggcctccattgacatttttttctttgcatattctatggtgtag
||||||||||| ||| ||||||| | ||| || |||||||| || ||||||||||| |||||||||||||||||||||| | | ||   |  ||  |||| | ||| || ||| |       ||| |        |||||| || |||  ||     |   |  |     
GTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCAATGTCTAATCCCACCATGAATGgtttgtttgtacacggctcattcagcaatcacaattgtttaataatgtccatgtttttcattttgacaattgttttgttatcattgagacag-----

upper sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA18G46340.1 (Glycine max), 5'ss of exon 13
GTGCTTAAGGCCATGCGAGAATCCGATTCTACCAAACCTGCAATTTTTGCAATGTCAAATCCCACCATGAATGgtttgtgt-tgcaaaccctatcaagcacttacatttatttcaggcagacatatggcctccattgacatttttttctttgcatattctatggtgtag
||||||||||| ||| ||||||| | ||| || |||||||| || ||||||||||| |||||||||||||||||||||| | | ||   |  ||  |||||| ||| || ||| |    | |  |||   | ||||   | | || | ||   ||  | | ||      
GTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCAATGTCTAATCCCACCATGAATGgtttgtttgtacacggctcattcagcactcacaattgtttaataatgtc-catgtttttcattttgactattgttttgttatcat-tgtgacag--

upper sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA03G01680.1 (Glycine max), 5'ss of exon 14
GTGCTTAAGGCCATGCGAGAATCCGATTCTACCAAACCTGCAATTTTTGCAATGTCAAATCCCACCATGAATGgtttgtgt-tgcaaaccctatcaagcacttacatttatttcaggcagacatatggcctc-cattgacatttttttctttgcatattctatg-gtgtag------
||||||||||| ||| ||||||| | ||| || |||||||| || ||||| ||||| || ||||||||||||||||||| | | |||  |  |||||||||| | | ||  || | | |    ||||   |  ||||||| |||| || |||   | || |||| || | |      
GTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCCATGTCTAACCCCACCATGAATGgtttgtttgtacaaggctcatcaagcactcataattccttaatg-atgtttatgttttttcattgactttttgtttttt---ttttttatgtgtatggggacag

upper sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA07G08110.1 (Glycine max), 5'ss of exon 13
GTGCTTAAGGCCATGCGAGAATCCGATTCTACCAAACCTGCAATTTTTGCAATGTCAAATCCCACCATGAATGgtttgtgt-tgcaaaccctatcaagcacttacatttatttcaggcagacatatggcctc-cattgacatttttttctttgcatattctatg-gtgtag--------
||||||||||| ||| ||||||| | ||| || |||||||| || ||||| ||||| || ||||||||||||||||||| | | |||  |  |||||||||| | | ||  || |   |    ||||   |  |||||||  |||||  |||   | || |||  || ||         
GTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCCATGTCTAACCCCACCATGAATGgtttgtttgtacaaggctcatcaagcactcataatttcttgata-atgtttatgttttttcattgactatttttcttttttcttttttatatgtatatggggacag

upper sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT4G00570.1 (Arabidopsis thaliana), 5'ss of exon 13
GTGCTTAAGGCCATGCGAGAATCCGATTCTACCAAACCTGCAATTTTTGCAATGTCAAATCCCACCATGAATGgtttgtgt-tgcaaaccctatcaagcacttacatttatttcaggcagacatatggcctccattgacatttttttctttgcatattctatggtgtag
|| || ||||| ||||||||||| || ||   ||| ||||| |||||||| ||||| ||||||||  |||||||||||||| |    | | || |||     |    ||   ||    | | || || |||      |||| ||||  | || | |             
GTTCTCAAGGCGATGCGAGAATCTGACTCATGCAAGCCTGCCATTTTTGCCATGTCGAATCCCACTTTGAATGgtttgtgtgtttttagcttagcaaagtaatgttgttccatctttgaaaaatctgccctg----aacatcttttcgtgtg-acag------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110699592|gb|EE076724.1|EE076724
EST:     CGAGTCTACCAAACCTGCAATTTTTGCAATGTCAAATCCCACCATGAATG                         CTGAGTGCACAGCTGCTGATGCTTTCAAGCATGCAGGAGAAAATATTGTTT
genomic: CGATTCTACCAAACCTGCAATTTTTGCAATGTCAAATCCCACCATGAATGgtttgtgttg ... tatggtgtagCTGAGTGCACAGCTGCTGATGCTTTCAAGCATGCAGGAGAAAATATTGTTT
EST: gi|110699700|gb|EE076930.1|EE076930
EST:     CGATTCTACCAAACCTGCAATTTTTGCAATGTCAAATCCCACCATGAATG                         CTGAGTGCACAGCTGCTGATGCTTTCAAGCATGCAGGAGAAAATATTGTTT
genomic: CGATTCTACCAAACCTGCAATTTTTGCAATGTCAAATCCCACCATGAATGgtttgtgttg ... tatggtgtagCTGAGTGCACAGCTGCTGATGCTTTCAAGCATGCAGGAGAAAATATTGTTT
EST: gi|33404797|gb|CF210424.1|CF210424
EST:     CGATTCTACCAAACCTGCAATTTTCGCAATGTCAAATCCCACCATGAATG                         CTGAGTGCACAGCTGCTGATGCTTTCAAGCATGCAGGAGAAAATATTGTTT
genomic: CGATTCTACCAAACCTGCAATTTTTGCAATGTCAAATCCCACCATGAATGgtttgtgttg ... tatggtgtagCTGAGTGCACAGCTGCTGATGCTTTCAAGCATGCAGGAGAAAATATTGTTT