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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTAGAGGCCCTCAAGGATTCAACTTCAACTAGACCAGCAATCTTTGCAATGTCAAACCCTACAAAAAATGgtatagtaattcagactggttcacatctttgacctaggcttcttaatcttatttttcttaaatatcttgtttgacag

Basic information

species Vitis vinifera
transcript Vv15s0021g00500.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g00500.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA03G24630.1 (Glycine max), 5'ss of exon 13
GTATTAGAGGCCCTCAAGGATTCAACTTCAACTAGACCAGCAATCTTTGCAATGTCAAACCCTACAAAAAATGgtat--agtaattcagactggttcacatc--tttgacctaggcttcttaatcttatttttcttaaatatcttgtttgacag------------------
||| ||||||||||||||| |||||| ||||| |||||||| || ||||| |||||||| || ||||| ||||||||  | |  |||    |  |  | ||   | ||  ||  |    |  |    ||   | |  ||||| |||| ||  |                   
GTACTAGAGGCCCTCAAGGGTTCAACATCAACCAGACCAGCCATATTTGCTATGTCAAATCCAACAAAGAATGgtatgtattttttcccctttttctaaattggtatgtgctgtggcaatggaaaacatggatttgtaatattttgtatgctacctccctcatttttggcag

upper sequence: Vv15s0021g00500.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT2G13560.1 (Arabidopsis thaliana), 5'ss of exon 13
GTATTAGAGGCCCTCAAGGATTCAACTTCAACTAGACCAGCAATCTTTGCAATGTCAAACCCTACAAAAAATGgta--tagtaattcagactggttcacatctttgacctaggcttcttaatcttatttttcttaaatatcttgtttgacag------------------
|| ||||| ||  | || | |||||| || || || || || || ||||||||||||||||| |||||||||||||  | ||  |      | |     |  | ||   |  | || ||  |  |  |||| |  |      |  | |  |                   
GTTTTAGAAGCAATGAAAGGTTCAACCTCGACAAGGCCTGCTATATTTGCAATGTCAAACCCCACAAAAAATGgtaatttgtcttctttctttgccataaaatgtgttttgcggttatttgtgattcttttttggatagatgtaataggtacttgtgttttgaataacag