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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGATAGGACTCCCAAACAGAAGGTGAAATTGAAAGTCACAGAGGAGAAGCTATTGAATTTGATGTTAAAATACAATGGGGGGAGGCCTAGATCTGAGgtgcttactttcccttcatctttttctcattttgttttattgtattgtcaatattcttatttatgtaatcgcttattagatggtgcatttgttgatgatctcttttgcag

Basic information

species Vitis vinifera
transcript Vv14s0066g02540.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os03g48300.3 (Oryza sativa), 5'ss of exon 13
TGGTGATAGGACTCCCAAACAGAAGGTGAAATTGAAAGTCACAGAGGAGAAGCTATTGAATTTGATGTTAAAATACAATGGGGGGAGGCCTAGATCTGAGgtgcttactttcccttcatctttttctcattttgttttattgtattgtcaatattcttatttatgtaatcgcttattagatggtgcatttgttgatgatctcttttgcag
||| ||| |||| || || ||||| |||||||||||||| || ||||| || ||  ||||||||||||| ||||||||||| || | ||| ||| |||||||       | |||||  |    |  |||||||   | ||| |  |||   |  | | |  ||  | ||   || ||    | |    |||| |                
TGGCGATCGGACACCAAAGCAGAAAGTGAAATTGAAAGTTACTGAGGAAAAACTCCTGAATTTGATGTTGAAATACAATGGTGGAAAGCCAAGAGCTGAGgta------tcccctttgtggaatattcatttt---tcattatcctgttggtgct-taaactaaatcattttttctt----gatttccttgtag----------------

upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA19G02260.1 (Glycine max), 5'ss of exon 11
TGGTGATAGGACTCCCAAACAGAAGGTGAAATTGAAAGTCACAGAGGAGAAGCTATTGAATTTGATGTTAAAATACAATGGGGGGAGGCCTAGATCTGAGgtgcttactttcccttcatctttttctcatt-ttgttttattgtattgtcaatattcttatttatgtaatcgcttattagatggtgcatttgttgatgatctcttttgcag
||||||||| ||||| ||||||||||||||  | || || || ||||| |||||  |||| || ||||| ||||||||||| ||  |||| |||||||||||  | ||| |    |  || ||   | ||  || ||  ||| ||||    |  | || | || | |||||   | |    ||||  || | ||| |  | | |||     
TGGTGATAGAACTCCAAAACAGAAGGTGAAGCTAAAGGTTACTGAGGAAAAGCTGCTGAACTTAATGTTGAAATACAATGGTGGCCGGCCGAGATCTGAGgtaat-actattttgtggtccttcagtaatggttattaaattttatt--tgagttactgagtttt-taatcttctgt---gtggttgatctattggtcttatgttta----

upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA13G05060.1 (Glycine max), 5'ss of exon 14
TGGTGATAGGACTCCCAAACAGAAGGTGAAATTGAAAGTCACAGAGGAGAAGCTATTGAATTTGATGTTAAAATACAATGGGGGGAGGCCTAGATCTGAGgtgcttactttcccttcatctttttctcattttgttttattgtattgtcaatattcttatttatgtaatcgcttattagatggtgcatttgttgatgatctcttttgcag
||||||||| ||||| ||||||||||||||  | ||  | || ||||| |||||  |||| || ||||| ||||||||||| ||  ||||||||||||||||  | ||| |    |  || ||   | ||     || |   | || |    |||  |   | | ||||||  | |    ||||  || | ||| |  | | ||      
TGGTGATAGAACTCCAAAACAGAAGGTGAAGCTAAAGATTACTGAGGAAAAGCTGCTGAACTTAATGTTGAAATACAATGGTGGCCGGCCTAGATCTGAGgtaat-actattttgtggtccttcagtaatgaatattaaaaattttatttgaattgctgaatttttaatcgtctgt---gtggttgatctattggtcttatatt------

upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA18G49000.1 (Glycine max), 5'ss of exon 13
TGGTGATAGGACTCCCAAACAGAAGGTGAAATTGAAAGTCACAGAGGAGAAGCTATTGAATTTGATGTTAAAATACAATGGGGGGAGGCCTAGATCTGAGgtgcttactttcccttcatctttttctcat-tttgttttattgtattgtcaatattcttatttatgtaatcgcttattagatggtgcatttgttgatgatctct--tttgcag
||||||||| ||||||||||||||||||||  | ||||| || ||||| |||||  | ||  | ||||| ||||||||||| ||  | |||||| |||||||| | | | |    |  | ||| | | || ||||| |  || ||||    || ||||   || | |  |   |||     |  ||| |   || ||||||| |  |||||||
TGGTGATAGAACTCCCAAACAGAAGGTGAAGCTAAAAGTTACTGAGGAAAAGCTGCTAAACCTAATGTTGAAATACAATGGAGGCCGACCTAGAGCTGAGgtgat-attattttctagtgtttgtgtaatatttgtctacttttatt--tgatcttctggattttttttttttttacctcttt-tgcttgatttaatgatcttttgtttgcag

upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA09G37610.1 (Glycine max), 5'ss of exon 11
TGGTGATAGGACTCCCAAACAGAAGGTGAAATTGAAAGTCACAGAGGAGAAGCTATTGAATTTGATGTTAAAATACAATGGGGGGAGGCCTAGATCTGAGgtgcttactttcccttcatctttttctcat-tttgttttattgtattgtcaatattcttatttatgtaatcgcttattagatggtgcatttgttgatgatctcttttgcag
||||||||| ||||||||||||||||||||  | ||||| || ||||| || ||  | ||  | ||||| ||||||||||| ||  | |||||| |||||||| | | | |    |  |  |  | | || |||||    || ||||    ||   ||   || | |  |  | | ||   || |  ||||  ||||  | |  |||||||
TGGTGATAGAACTCCCAAACAGAAGGTGAAGCTAAAAGTTACTGAGGAAAAACTGCTAAACCTAATGTTGAAATACAATGGAGGCCGACCTAGAGCTGAGgtgat-attattttctagtgctaatgtaatatttgtcaacttttatt--tgatccactggattttttttttacctcttt--tgtttgatttaatgatc-ttttgtttgcag

upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT5G15070.2 (Arabidopsis thaliana), 5'ss of exon 14
TGGTGATAGGACTCCCAAACAGAAGGTGAAATTGAAAGTCACAGAGGAGAAGCTATTGAATTTGATGTTAAAATACAATGGGGGGAGGCCTAGATCTGAGgtgcttactttcccttcatctttttctcattttgttttattgtattgtcaatattcttatttatgtaatcgcttattagatggtgcatttgttgatgatctcttttgcag
||||||||| || ||||| ||||| |||||| | ||||| ||||||||||| || || ||  ||||||| || |||||||| || |  || ||| ||||||||      ||    |  ||    |   | ||||        ||| |   || |||| ||       | ||  ||||   |  | | ||| ||   |             
TGGTGATAGAACCCCCAAGCAGAAAGTGAAACTAAAAGTTACAGAGGAGAAACTGTTAAACCTGATGTTGAAGTACAATGGAGGAAAACCAAGAGCTGAGgtgagaggcttgggattttccaccttcaactttgccccgcc-tatagg-gattttctgat-------accgtgtattttttttttccttttttacag-------------