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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATCCCTATATCGTGAGGGACCTGGTAAAGATCCATTTAGACCAGATCAAAAGACACCGGTTAAGAATTTCTTCCTTGCTGGCTCATACACAAAACAGgtaatttttgccttaacttcatccactcactgataatactgtttggttaccaaactgtcctgcatttccaccagcatttaatttgaaaagaaaaatgacataatggattaatatacattcttaataagctagttgggtggctttctcattcacaattcatcattgggacatgtgtttgggcttgtacag

Basic information

species Vitis vinifera
transcript Vv14s0030g01740.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os07g10490.1 (Oryza sativa), 5'ss of exon 13
CCAATCCCTATATCGTGAGGGACCTGGTAAAGATCCATTTAGACCAGATCAAAAGACACCGGTTAAGAATTTCTTCCTTGCTGGCTCATACACAAAACAGgtaatttttgccttaacttcatc-cactcactgataat-actgtttggttaccaaactgtcctgcatttccacca-gcatttaatttgaaaagaaaaatgacataatggattaatatacattcttaataagctagttgggtggctttctcattcacaattcatcattgggacatgtgtttgggcttgtacag
 |||||  | || || |||  ||| || || |||||||||||||| |||||||||||||| ||||| || ||||||||  ||||||| |||||||||||||||  |    | || ||||  || |  ||||   |||| | |    | | | ||||      ||  ||    |     |||||  ||  ||  |  || |                                                                                            
TCAATCATTGTACCGCGAGTCACCAGGAAATGATCCATTTAGACCTGATCAAAAGACACCAGTTAAAAACTTCTTCCTGTCTGGCTCTTACACAAAACAGgtatctaaaccattgacttagtcactgtcaccagtaatcaatcagcgctcatcaaatacaattgttttgattctgtaaatttagattttaagcaggaagg--------------------------------------------------------------------------------------------

upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA10G30220.1 (Glycine max), 5'ss of exon 13
CCAATCCCTATATCGTGAGGGACCTGGTAAAGATCCATTTAGACCAGATCAAAAGACACCGGTTAAGAATTTCTTCCTTGCTGGCTCATACACAAAACAGgtaatttttgccttaacttcatccactcactgataatactgtttggttaccaaactgtcctgcatttccaccagcatttaatttgaaaagaaaaatgacataatggattaatatacattcttaataagctagttgggtggctttctcattcacaattcatcattgggacatgtgtttgggcttgtacag
|||||| || || |||||||| |||||||||||||||| |||||| |||||||||||||| || | ||||||||| ||||||||||| |||||||| ||||||     |  ||| |||         |  ||   ||| | | |       ||| |  | ||  | || |   || |   |  ||      |  |   | ||                                                                                       
CCAATCTCTGTACCGTGAGGGGCCTGGTAAAGATCCATATAGACCTGATCAAAAGACACCAGTGAGGAATTTCTTTCTTGCTGGCTCTTACACAAAGCAGgtagcacct-tcttgactatgcttctcctatgcatataatatatttcctttaaaattgcatgt-tatctagatgcttcatagctgtggtttatgagatccta---------------------------------------------------------------------------------------

upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA20G37170.1 (Glycine max), 5'ss of exon 13
CCAATCCCTATATCGTGAGGGACCTGGTAAAGATCCATTTAGACCAGATCAAAAGACACCGGTTAAGAATTTCTTCCTTGCTGGCTCATACACAAAACAGgtaatttttgccttaacttcatccactcactgataatactgtttggttaccaaactgtcctgcatttccaccagcatttaatttgaaaagaaaaatgacataatggattaatatacattcttaataagctagttgggtggctttctcattcacaattcatcattgggacatgtgtttgggcttgtacag
 |||||  | || ||||||||||||||||||||||||| |||||| ||||||||||| || || ||||||||||| |||||||| || |||||||| ||||||     |   || |||         |  ||   ||| | | | |     ||| |  | ||  | || |   || ||  |  ||    | |  |   | ||                                                                                       
TCAATCTTTGTACCGTGAGGGACCTGGTAAAGATCCATATAGACCTGATCAAAAGACGCCAGTGAAGAATTTCTTTCTTGCTGGATCTTACACAAAGCAGgtagcacct-tgttgactatgcttctcctatgcatataatatattgcccttaaaattgcatgt-tatctagatgctttgtagctgcggtgtatgagatccta---------------------------------------------------------------------------------------

upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT3G04870.1 (Arabidopsis thaliana), 5'ss of exon 12
CCAATCCCTATATCGTGAGGGACCTGGTAAAGATCCATTTAGACCAGATCAAAAGACACCGGTTAAGAATTTCTTCCTTGCTGGCTCATACACAAAACAGgtaa--tttttgccttaacttcatccactcactgataatactgtttggttaccaa-actgtcctgcatttccaccagcatttaatttgaaaagaaaaatgacataatggattaatatacattcttaataagctagttgggtggctttctcattcacaattcatcattgggacatgtgtttgggcttgtacag
 || || || || ||||| | ||| || ||||||||||| ||||| ||||| ||||| ||  | |||||||||||||| || || ||||||||||| |||||||  |||||  ||||   || | ||  ||      || |    | | ||| ||  |   |  | |   || |||  |||   | ||| ||     |      | ||    ||| |   ||||  |   | ||                                                          
TCAGTCTCTGTACCGTGAAGCACCCGGAAAAGATCCATTCAGACCCGATCAGAAGACGCCCATAAAGAATTTCTTCCTCGCCGGTTCATACACAAAGCAGgtaacatttttcacttactatctttcagcca-----gatccccgatagctacaaatgcaagcaagaacagcctccaa-attgtgtctgagaaatccgaaagatcagtgag--aattttgtttctggacttgttacag-------------------------------------------------------