Sequence
atgc intronic sequence ATGC exonic sequenceAATGGCTGATGCTTTAGTTATCGCTCACGTGGGTGGTTCATCCTTGTGGGAGAGTACGCGTGATCAGTACCTCAAGATGAGCCGTTCACCCTATCTAAAGgtatccaagaattgcaaatggttttctagaaagtagtgaagcattttatctattccactaataattattctgatctatatcagattcacacttttactcttttaagaattatgaagcaataacaaggtatttaaaaggacttctcattagatgtggtgtttcctctctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT1G18830.1 (Arabidopsis thaliana), 5'ss of exon 13
AATGGCTGATGCTTTAGTTATCGCTCACGTGGGTGGTTCATCCTTGTGGGAGAGTACGCGTGATCAGTACCTCAAGATGAGCCGTTCACCCTATCTAAAGgtatccaagaattgcaaatggttttctagaaagtagtgaagcattttatctattccactaataattattctgatctatatcagattcacacttttactcttttaagaattatgaagcaataacaaggtatttaaaaggacttctcattagatgtggtgtttcctctctcag
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GATGGCTGATGCTTTAGTTATTGCTCATGTTGGTGGTACAGAATTGTGGGAGAGTACTCGTGATAAATATATAAGGATGAGCAATGCTCCTTACATGAAGgtat--agatattattagacgttttttcaa-------------ctttacttgatatgttgataagtataagtgtc-atcttatatt-actatgttaatctgttacag----------------------------------------------------------------
upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT3G63460.3 (Arabidopsis thaliana), 5'ss of exon 13
AATGGCTGATGCTTTAGTTATCGCTCACGTGGGTGGTTCATCCTTGTGGGAGAGTACGCGTGATCAGTACCTCAAGATGAGCCGTTCACCCTATCTAAAGgtatccaagaattgcaaatggttttctagaaagtagtgaagcattttatctattccactaataattattctgatctatatcagattc-acacttttactcttttaagaattatgaagcaataacaaggtatttaaaaggacttctcattagatgtggtgtttcctctctcag
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GATGGCCGATGCTTTAGTTATTGCTCATGTTGGTGGTACAGCGTTGTGGGAGAGTACTCGTGAGAAATATTTGAAGACGAGCAGTGCGCCATACATGAAGgtatatgtatattctttcccaactt--gatatgtaggtaagtgcc--atctacacccctgtttgtggttgcaaaatctgtaaactactgtatgtttatctatttcag-----------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294966834|gb|GW839709.1|GW839709EST: AGAGTACGCGTGATCAGTACCTCAAGATGAGCCGTTCACCCTATCTAAAG GTTGTGTCTGCAATGGTGAACAATGATCTTATGAGCCTTGTTAACACCAGA
genomic: AGAGTACGCGTGATCAGTACCTCAAGATGAGCCGTTCACCCTATCTAAAGgtatccaaga ... cctctctcagGTTGTGTCTGCAATGGTGAACAATGATCTTATGAGCCTTGTTAACACCAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATGGCTGATGCTTTAGTTATCGCTCACGTGGGTGGTTCATCCTTGTGGGAGAGTACGCGTGATCAGTACCTCAAGATGAGCCGTTCACCCTATCTAAAGgtatccaagaattgcaaatggttttctagaaagtagtgaagcattttatctattccactaataattattctgatctatatcagattcacacttttactcttttaagaattatgaagcaataacaaggtatttaaaaggacttctcattagatgtggtgtttcctctctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG