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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAAGATCTCCATGGCTGTGCATTTGTTTATGGCTCATTGAGTTTCTTGGACAAAATTTCATGTGGGCTAGCCTTGTTCGTTCTTGAGTCATATGGAAgtaagtcgataagctagtcatccttcaatgctttttatcagtgtcaccagactagacctaaagcagcccttgcaaggcttactacatgagtatgacccat...

Basic information

species Vitis vinifera
transcript Vv13s0156g00080.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G121458_T01 (Zea mays), 5'ss of exon 12
GGTGAAGATCTCCATGGCTGTGCATTTGTTTATGGCTCATTGAGTTTCTTGGACAAAATTTCATGTGGGCTAGCCTTGTTCGTTCTTGAGTCATATGGAAgtaagtcgataagctagtcatccttcaatgctttt-tatcagtgtcaccagactagaccta--aagcagcccttgcaaggctt--actacatgagtatgacccat---------
|| ||||||||  |||| ||||| ||||| ||||||||||| |||||  | |||||| ||||||||||  ||||  | |  ||||| ||||| |||  | ||||   ||   |  ||  ||| |  | | ||     ||||   | | || | |  ||||   || |  ||  |  || | ||  |  | ||  | ||    |||         
GGAGAAGATCTAAATGGTTGTGCTTTTGTGTATGGCTCATTAAGTTTTGTTGACAAAGTTTCATGTGGAATAGCTCTCTATGTTCTCGAGTCCTATCAAGgtaa--tgact-gtcagctatctt--agtactggcacatcatcataagcaaaattaaccttgtaatcttccggtaaaaagttttgatgagattgggatctgacatgcatggcag

upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G060762_T01 (Zea mays), 5'ss of exon 12
GGTGAAGATCTCCATGGCTGTGCATTTGTTTATGGCTCATTGAGTTTCTTGGACAAAATTTCATGTGGGCTAGCCTTGTTCGTTCTTGAGTCATATGGAAgtaagtcgataagctagtcatccttcaatgctttt-tatcagtgtcaccagactagaccta--aagcagcccttgcaaggcttact-acatgagtatgacccat-----
|| ||||||||  |||| ||||| ||||| ||||||||||| |||||  | |||||| ||||||||||  |||   |||   |||||||||| |||  | |||| |       ||     |   | ||| |||    ||||   | | || | | | | |   || |  ||  || |||  ||  | |  |  ||||    |||     
GGAGAAGATCTAAATGGTTGTGCTTTTGTGTATGGCTCATTAAGTTTTGTTGACAAAGTTTCATGTGGAGTAGTTCTGTATATTCTTGAGTCCTATCAAGgtaatt------actgccactatctgaatacttgcacatcatcataagcaaaattggctttgtaatcttccggtgaaagttttgatgaggttggtattttgcatggcag

upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA08G16870.2 (Glycine max), 5'ss of exon 12
GGTGAAGATCTCCATGGCTGTGCATTTGTTTATGGCTCATTGAGTTTCTTGGACAAAATTTCATGTGGGCTAGCCTTGTTCGTTCTTGAGTCATATGGAAgtaagtcgataagctagtcatcc--ttcaatgctttttatc-agtgtcaccagactagacctaaagcagcccttgcaaggcttacta-catga-gtatgacccat-------------
|| ||  | ||  |||| ||||||||||||  ||| ||||||||||| ||||||||||||||||||||||| || || |  |||||| ||||| |   ||||||||   | |  |     ||   || ||   | | | || | |||  |   |  ||   |    |    | |   |   ||   | ||| |  |||    ||              
GGAGAGAACCTTAATGGTTGTGCATTTGTTGTTGGATCATTGAGTTTTTTGGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttcttaaatttctttcatattgaacattatatgtctattgtttcgtaaacagcattgttactaatcatatcatttttctaatcatcatatattgttcaaatcatcaatgtag

upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA08G16870.4 (Glycine max), 5'ss of exon 9
GGTGAAGATCTCCATGGCTGTGCATTTGTTTATGGCTCATTGAGTTTCTTGGACAAAATTTCATGTGGGCTAGCCTTGTTCGTTCTTGAGTCATATGGAAgtaagtcgat--aagctagtcatccttcaatgctttttatc-agtgtcaccagactagacctaaagcagcccttgcaaggcttacta-catga-gtatgacccat---------------------------
|| ||  | ||  |||| ||||||||||||  ||| ||||||||||| ||||||||||||||||||||||| || || |  |||||| ||||| |   ||||||||   |  ||  |  |     || ||   | | | || | |||  |   |  ||   |    |    | |   |   ||   | ||| |  |||    ||                            
GGAGAGAACCTTAATGGTTGTGCATTTGTTGTTGGATCATTGAGTTTTTTGGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttcttaaatttctttcatattgaacattatatgtctattgtttcgtaaacagcattgttactaatcatatcatttttctaatcatcatatattgttcaaatcatcaatgtagatctctctccgcag

upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA15G42210.1 (Glycine max), 5'ss of exon 12
GGTGAAGATCTCCATGGCTGTGCATTTGTTTATGGCTCATTGAGTTTCTTGGACAAAATTTCATGTGGGCTAGCCTTGTTCGTTCTTGAGTCATATGGAAgtaagtcgataagcta---gtcatccttcaatgctttttatcagtgtcac-cagactagac----ctaaagcagcccttgcaaggcttactacatgagtatgacccat
                                    |||||||| || ||||||||||||||||||||| | || || |  |||||  ||||| |   ||||||||   | |  |     | ||| |  | ||   || | ||   |    |  |  | |      | ||     |  || |   ||  || ||    |         
-----------------------------------ATCATTGAGCTTTTTGGACAAAATTTCATGTGGGATTGCTTTATATGTTCTCCAGTCAAACCAAAGTAAGTTTCTTAAATTTCTTTTATCTTATAGTGGAgttgaacatcatttttctaatcatatattgttcaaatcatcaatgtagatctctctccacagctccag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28966413|gb|CB345446.1|CB345446
EST:     GGACAAAATTTCATGTGGGCTAGCCTTGTTCGTTCTTGAGTCATATGGAA                         ATTCCTCTCCAGACCTCCAGGGATCAGTTATTTCACGTTTTTCGGTTTCAA
genomic: GGACAAAATTTCATGTGGGCTAGCCTTGTTCGTTCTTGAGTCATATGGAAgtaagtcgat ... aataatgcagATTCCTCTCCAGACCTCCAGGGATCAGTTATTTCACGTTTTTCGGTTTCAA
EST: gi|110377866|gb|EC942964.1|EC942964
EST:     GGACAAAATTTCATGTGGGCTAGCCTTGTTCGTTCTTGAGTCATATGGAA                         ATTCCTCTCCAGACCTCCAGGGATCAGTTATTTCACGTTTTTCGGTTTCAA
genomic: GGACAAAATTTCATGTGGGCTAGCCTTGTTCGTTCTTGAGTCATATGGAAgtaagtcgat ... aataatgcagATTCCTCTCCAGACCTCCAGGGATCAGTTATTTCACGTTTTTCGGTTTCAA
EST: gi|29784536|gb|CB345387.2|CB345387
EST:     GGACAAAATTTCATGTGGGCTAGCCTTGTTCGTTCTTGAGTCATATGGAA                         ATTCCTCTCCAGACCTCCAGGGATCAGTTATTTCACGTTTTTCGGTTTCAA
genomic: GGACAAAATTTCATGTGGGCTAGCCTTGTTCGTTCTTGAGTCATATGGAAgtaagtcgat ... aataatgcagATTCCTCTCCAGACCTCCAGGGATCAGTTATTTCACGTTTTTCGGTTTCAA
EST: gi|110397223|gb|EC962952.1|EC962952
EST:     GGACAAAATTTCATGTGGGCTAGCCTTGTTCGTTCTTGAGTCATATGGAA                         ATTCCTCTCCAGACCTCCAGGGATCAGTTATTTCACGTTTTTCGGTTTCAA
genomic: GGACAAAATTTCATGTGGGCTAGCCTTGTTCGTTCTTGAGTCATATGGAAgtaagtcgat ... aataatgcagATTCCTCTCCAGACCTCCAGGGATCAGTTATTTCACGTTTTTCGGTTTCAA