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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATAATTTGTAATGTGGACGAGAAGGATATTGCTGAACACCTTAGAgtaagatgtttatttgtaaatactgagttgagttcttcaaacttctgttctttcaatagaattgtattgagcactttagttattatattccag

Basic information

species Vitis vinifera
transcript Vv13s0073g00610.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0073g00610.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os11g36470.1 (Oryza sativa), 5'ss of exon 9
AAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATAATTTGTAATGTGGACGAGAAGGATATTGCTGAACACCTTAGAgtaagatgtttatttgtaaatactgagttgagttcttcaaacttct-gttctttcaatagaattgtattgagcactttagttattatattccag--------
||| || |||||||| ||||||||||| || || ||||| ||||| ||||| |||||||| |||||||| || |||||||| |||||||| ||  | || ||| | ||||  |||| |    |     |   |    |||  | || | |    | || | |   ||   | | | |  || |  | |     |        
AAAGTATTCAAATGCCTACATGCTTGTCTACATCCGTGAGAGTGATAAGGACAAAATAATGTGTAATGTTGATGAGAAGGACATTGCTGAGCATTTAAGGgtatg-tgttgttttgcattctcactcctccttgggccaatttcctcgataccacgattggaaaatacc-atcgcatgtgtcaacacacgtgggcccaggcc

upper sequence: Vv13s0073g00610.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 5'ss of exon 13
AAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATAATTTGTAATGTGGACGAGAAGGATATTGCTGAACACCTTAGAgtaagatgtttatttgtaaatactgagttgagttcttcaaacttctgttctttcaatagaattgtattgagc-actttagttattatattccag
||| || || ||||| ||||||||||| ||||| ||||| || |||||||| |||||||| |||||||| || || ||||| || ||||| ||  |  | |||||    | ||   ||    |  |  |    | ||||   || | | | ||    ||   ||| |||||  | || |  | |  | || |||
AAAGTATTCGAATGCCTACATGCTTGTCTATATTCGTGAGAGCGACAAGGATAAAATAATGTGTAATGTTGATGAAAAGGACATCGCTGAGCATTTGCGGgtaagta--tcatgcatattctcctaccttc-ctattcagtattttatacatttttcagg--tgttttgagggaattcaactgtgctcttgcag

upper sequence: Vv13s0073g00610.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os01g56490.1 (Oryza sativa), 5'ss of exon 13
AAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATAATTTGTAATGTGGACGAGAAGGATATTGCTGAACACCTTAGAgtaagatgtttatttgtaaatactgagttgagttcttcaaacttctgttctttcaatagaattgtattgagcactttagttattatattccag
 ||  | |||||||| |||||||||||||| || |||||||||||||  || ||||| ||||| ||| | || || || || ||  | ||||||||||  ||||  |  || ||      |  |   ||| ||    || |  | ||||||      |  |     || | ||                    
TAAGCATTCAAATGCTTACATGCTTGTGTACATTCGTGAAAGTGACAGAGAAAAAATTATTTGCAATTTAGATGAAAACGACATACCAGAACACCTTAAGgtaa--tacttcttcccttttcttttcttgggtatcacagaact-tgttctgatgtcatgaaaacctttaccag-------------------

upper sequence: Vv13s0073g00610.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 13
AAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATAATTTGTAATGTGGACGAGAAGGATATTGCTGAACACCTTAGAgtaagatgtttatttgtaaatactgagttgagttcttcaaacttctgttctttcaatagaattgtattgagcactttagttattatattccag
||| || |||||||| ||||||||||| ||||||||||| | ||||||||| |||||||| |||||||| || ||||||||||||||||| ||  |  | |||||  |||    | ||  |  |    |    | |  |   |  |||  |||   | ||    || |||    || |  | || | || |||
AAAGTATTCAAATGCCTACATGCTTGTCTATATACGTGAGAATGACAAGGATAAAATAATGTGTAATGTCGATGAGAAGGATATTGCTGAGCATTTGCGGgtaagtagttctggtatactttgtccccttttctatgtatcatcttgtgtttttgttggag--atagtgattgattgaactgttcttttacag

upper sequence: Vv13s0073g00610.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G303655_T01 (Zea mays), 5'ss of exon 3
AAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATAATTTGTAATGTGGACGAGAAGGATATTGCTGAACACCTTAGAgtaagatgttta----tttgtaaatactgagttgagttc--ttcaaacttctgttctttcaatagaattgtattgagcactttagttattatattccag
||| || || ||||| ||||||||||| ||||||||||| |||||||| ||||||||||| |||||||| || |||||||| || ||||| ||  |  | |||||  |||      ||  |  |||||        ||   ||  | | |||  | |||   | |||   || |||    || |  |||| | || |||
AAAGTATTCGAATGCCTACATGCTTGTCTATATACGTGAGAGTGACAAAGAGAAAATAATGTGTAATGTCGATGAGAAGGACATCGCTGAGCATTTGCGGgtaagtagttcggtagttcctgtatactttcccacttttctttgtatcatcttgtatttttgttgaag-atagtgattgattgaactattcttttacag

upper sequence: Vv13s0073g00610.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA10G23680.1 (Glycine max), 5'ss of exon 9
AAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATAATTTGTAATGTGGACGAGAAGGATATTGCTGAACACCTTAGAgtaagatgttt-----atttgt---aaatactgagttgagttcttcaaacttctgttctttcaatagaattgtattgagcactttagttattatattccag
|||| |||| |||||||| |||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||     |||  |   | || ||   |||  ||  |  || || |||||  | ||||   |  | | |   | |     |        ||  
AAAACACTCGAATGCATATATGCTTGTCTATGTACGTGAGAGTGACAAGGATAAAATAATTTGTAATGTGGACGAGAAGGACATTGCTGAACACCTTAGAgtaagacgtttgaatcattgatgtcatattcttttttggcttaattgaatttttgttcacttaatattgtcatttggtaaattccccctcacccccaccc-