1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ACTTTAATACTTCCATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATCACACGTTTTCAGgtatgagcaatgaatatctgtttaagcattggtaaaaatgataagaacatttttttaaaggcaaataagaatatatatatatagagagagagatagatag...
species | Vitis vinifera |
transcript | Vv13s0019g04660.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATCACACGTTTTCAG GGATCACTCTGTATTCTGATTATTGCAGTGGGCGTTGTGTCTTCAGCCTTTEST: gi|110424687|gb|EC991055.1|EC991055
genomic: CATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATCACACGTTTTCAGgtatgagcaa ... tatcgtgtagGGATCACTCTGTATTCTGATTATTGCAGTGGGCGTTGTGTCTTCAGCCTTT
EST: CATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATCACGCGTTTTCAG GGATCACTCTGTATTCTGATTATTGCAGTGGGCGTTGTGTCTTCAGCCTTTEST: gi|110699502|gb|EE076557.1|EE076557
genomic: CATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATCACACGTTTTCAGgtatgagcaa ... tatcgtgtagGGATCACTCTGTATTCTGATTATTGCAGTGGGCGTTGTGTCTTCAGCCTTT
EST: CATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATCACACGTTTTCAG GGATCACTCTGTATTCTGATTATTGCAGTGGGCGTTGTGTCTTCAGCCTTTEST: gi|110382983|gb|EC947317.1|EC947317
genomic: CATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATCACACGTTTTCAGgtatgagcaa ... tatcgtgtagGGATCACTCTGTATTCTGATTATTGCAGTGGGCGTTGTGTCTTCAGCCTTT
EST: CATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATCACACGTTTTCAG GGATCACTCTGTATTCTGATTATTGCAGTGGGCGTTGTGTCTTCAGCCTTT
genomic: CATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATCACACGTTTTCAGgtatgagcaa ... tatcgtgtagGGATCACTCTGTATTCTGATTATTGCAGTGGGCGTTGTGTCTTCAGCCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTTAATACTTCCATGTGCTTGTTTCCTAAGCATCTTGAGGGGAAAAATCACACGTTTTCAGgtatgagcaatgaatatctgtttaagcattggtaaaaatgataagaacatttttttaaaggcaaataagaatatatatatatagagagagagatagatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaga