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GTGGGAAATTTGGGTGCTCCAGTTGAAGAATGGACAGTGGGAGGAACGGCATTGACTTCTTTGATGGATGTGGAGAGGAGACATGgtttgctaccgcttcacttatctcattgtccttattatcctccaatcatatcaggttttttattttttctaaaccttaccatttggcag
species | Vitis vinifera |
transcript | Vv12s0059g01220.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GGCATTGACTTCTTTGATGGATGTGGAGAGGAGACATG GAAAGTTCAAACCCGTGATAAAGAAGGCAATGGTGGAACTCGAAGEST: gi|110371529|gb|EC935625.1|EC935625
genomic: GGCATTGACTTCTTTGATGGATGTGGAGAGGAGACATGgtttgctacc ... catttggcagGAAAGTTCAAACCCGTGATAAAGAAGGCAATGGTGGAACTCGAAG
EST: AGTGGGCGGAACGGCATTGACTTCTTTGATGGATGTGGAGAGGAGACATG GAAAGTTCAAGCCCGTGATAAAGAAGGCAATGGTGGAACTCGAAGEST: gi|110373553|gb|EC937799.1|EC937799
genomic: AGTGGGAGGAACGGCATTGACTTCTTTGATGGATGTGGAGAGGAGACATGgtttgctacc ... catttggcagGAAAGTTCAAACCCGTGATAAAGAAGGCAATGGTGGAACTCGAAG
EST: AGTGGGCGGAACGGCATTGACTTCTTTGATGGATGTGGAGAGGAGACATG GAAAGTTCAAGCCCGTGATAAAGAAGGCAATGGTGGAACTCGAAG
genomic: AGTGGGAGGAACGGCATTGACTTCTTTGATGGATGTGGAGAGGAGACATGgtttgctacc ... catttggcagGAAAGTTCAAACCCGTGATAAAGAAGGCAATGGTGGAACTCGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGAAATTTGGGTGCTCCAGTTGAAGAATGGACAGTGGGAGGAACGGCATTGACTTCTTTGATGGATGTGGAGAGGAGACATGgtttgctaccgcttcacttatctcattgtccttattatcctccaatcatatcaggttttttattttttctaaaccttaccatttggcag
- - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA