1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTACTTCGAACAGGGCAGATAGATTTGTCTCAGTTTGGAATTGATCCAAGTAAATgtaagtagttcgtatagctttaaaaacttaaatcctggcaatgaatttaacctcgctgtgaaagatttcttcttttatttagttattgtttcattagtttatagacttggtggctagatttttttgttttaaaagaaataatttttccctttttccatgcag
species | Vitis vinifera |
transcript | Vv11s0065g00450.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TCGAACAGGGCAGATAGATTTGTCTCAGTTTGGAATTGATCCAAGTAAAT ACAAGTTCACTGTTCTCTCATTTCTAGAGGCACTTGAAGATACAGTTTGCAEST: gi|110395278|gb|EC960936.1|EC960936
genomic: TCGAACAGGGCAGATAGATTTGTCTCAGTTTGGAATTGATCCAAGTAAATgtaagtagtt ... ttccatgcagACAAGTTCACTGTTCTCTCATTTCTAGAGGCACTTGAAGATACAGTTTGCA
EST: TCGAACAGGGCAGATAGATTTGTCTCAGTTTGGAATTGATCCAAGTAAAT ACAAGTTCACTGTTCTCTCATTTCTAGAGGCACTTGAAGATACAGTTTGCAEST: gi|18459586|gb|BM437864.1|BM437864
genomic: TCGAACAGGGCAGATAGATTTGTCTCAGTTTGGAATTGATCCAAGTAAATgtaagtagtt ... ttccatgcagACAAGTTCACTGTTCTCTCATTTCTAGAGGCACTTGAAGATACAGTTTGCA
EST: TCGAACAGGGCAGATAGATTTGTCTCAGTTTGGAATTGATCCAAGTAAAT ACAAGTTCACTGTTCTCTCATTTCTAGAGGCACTTGAAGATACAGTTTGCAEST: gi|110391622|gb|EC956610.1|EC956610
genomic: TCGAACAGGGCAGATAGATTTGTCTCAGTTTGGAATTGATCCAAGTAAATgtaagtagtt ... ttccatgcagACAAGTTCACTGTTCTCTCATTTCTAGAGGCACTTGAAGATACAGTTTGCA
EST: TCGAACAGGGCAGATAGATTTGTCTCAGTTTGGAATTGATCCAAGTAAAT ACAAGTTCACTGTTCTCTCATTTCTAGAGGCACTTGAAGATACAGTTTGCAEST: gi|110377829|gb|EC942921.1|EC942921
genomic: TCGAACAGGGCAGATAGATTTGTCTCAGTTTGGAATTGATCCAAGTAAATgtaagtagtt ... ttccatgcagACAAGTTCACTGTTCTCTCATTTCTAGAGGCACTTGAAGATACAGTTTGCA
EST: TCGAACAGGGCAGATAGATTTGTCTCAGTTTGGAATTGATCCAAGTAAAT ACAAGTTCACTGTTCTCTCATTTCTAGAGGCACTTGAAGATACAGTTTGCA
genomic: TCGAACAGGGCAGATAGATTTGTCTCAGTTTGGAATTGATCCAAGTAAATgtaagtagtt ... ttccatgcagACAAGTTCACTGTTCTCTCATTTCTAGAGGCACTTGAAGATACAGTTTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTTCGAACAGGGCAGATAGATTTGTCTCAGTTTGGAATTGATCCAAGTAAATgtaagtagttcgtatagctttaaaaacttaaatcctggcaatgaatttaacctcgctgtgaaagatttcttcttttatttagttattgtttcattagtttatagacttggtggctagatttttttgttttaaaagaaataatttttccctttttccatgcag
- - - - - - - GCAGAT