1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGCTCTGGGGGCTGGCCCAGTTCCAGGTCTTCTCCTACCAGAAATTTTCCCAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGGgtaatacttggttgcatgtttttttaaaattttttttttcctcatcctcgtcctttattcttctgtgagttgaattcaaaatcctggcatgtgatacttt...
species | Vitis vinifera |
transcript | Vv11s0016g03660.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGG GTGATAAATTTCTTTGTGGGCTTGCTCTTCCTGCGTTTGCTGGAGCAACTTEST: gi|110715750|gb|EE094159.1|EE094159
genomic: CAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGGgtaatacttg ... tcttctccagGTGATAAATTTCTTTGTGGGCTTGCTCTTCCTGCCTTTGCTGGAGCAACTT
EST: CAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGG GTGATAAATTTCTTTGTGGGCTTGCTCTTCCTGCCTTTGCTGGAGCAACTTEST: gi|110367100|gb|EC931022.1|EC931022
genomic: CAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGGgtaatacttg ... tcttctccagGTGATAAATTTCTTTGTGGGCTTGCTCTTCCTGCCTTTGCTGGAGCAACTT
EST: CAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGG GTGATAAATTTCTTTGTGGGCTTGCTCTTCCTGCGTTTGCTGGAGCAACTTEST: gi|110399825|gb|EC966355.1|EC966355
genomic: CAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGGgtaatacttg ... tcttctccagGTGATAAATTTCTTTGTGGGCTTGCTCTTCCTGCCTTTGCTGGAGCAACTT
EST: CAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGG GTGATAAATTTCTTTGTGGGCTTGCTCTTCCTGCGTTTGCTGGAGCAACTTEST: gi|110409716|gb|EC975386.1|EC975386
genomic: CAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGGgtaatacttg ... tcttctccagGTGATAAATTTCTTTGTGGGCTTGCTCTTCCTGCCTTTGCTGGAGCAACTT
EST: CAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGG GTGATAAATTTCTTTGTGGGCTTGCTCTTCCTGCGTTTGCTGGAGCAACTTEST: gi|83275659|gb|DV939667.1|DV939667
genomic: CAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGGgtaatacttg ... tcttctccagGTGATAAATTTCTTTGTGGGCTTGCTCTTCCTGCCTTTGCTGGAGCAACTT
EST: CAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGG GTGATAAATTTCTTTGTGGGCTTGCTCTTCCTGCGTTTGCTGGAGCAACTTEST: gi|32460704|gb|CD801878.1|CD801878
genomic: CAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGGgtaatacttg ... tcttctccagGTGATAAATTTCTTTGTGGGCTTGCTCTTCCTGCCTTTGCTGGAGCAACTT
EST: AAAGCTATGGCAGTCTGTATGTCTGTGCATTGG GTGATATAAATTTCTTTGTGGGCTTGCTCTTCCTGCCTTTGCTGGAGCAACEST: gi|110406856|gb|EC972443.1|EC972443
genomic: AAAGCTATGGCAGTCTGTATGTCTGTGCATTGGgtaatacttg ... tcttctccagGTG--ATAAATTTCTTTGTGGGCTTGCTCTTCCTGCCTTTGCTGGAGCAAC
EST: CAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGG GTGATAAATTTCTTTGTGGGCTTGCTCTTCCTGCGTTTGCTGGAGCAACTT
genomic: CAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGGgtaatacttg ... tcttctccagGTGATAAATTTCTTTGTGGGCTTGCTCTTCCTGCCTTTGCTGGAGCAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCTGGGGGCTGGCCCAGTTCCAGGTCTTCTCCTACCAGAAATTTTCCCAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGGgtaatacttggttgcatgtttttttaaaattttttttttcctcatcctcgtcctttattcttctgtgagttgaattcaaaatcctggcatgtgatacttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattcaaa