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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGACCCTTCTCGTCGGAGAATTTCTGGTGATGGAGGAGGTTTATCCAAGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATGgtaagttgttttgatggtattagaaaaaagtctctatctctctctctatctgtctctgcgtgctcaagtcatcctctggtttgtacaattttaccgatat...

Basic information

species Vitis vinifera
transcript Vv11s0016g01950.t01
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30126634|gb|CB911973.1|CB911973
EST:     AGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATG                         TTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
genomic: AGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATGgtaagttgtt ... ggcaatgcagTTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
EST: gi|27580770|gb|CB003465.1|CB003465
EST:     GAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATG                         TTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
genomic: GAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATGgtaagttgtt ... ggcaatgcagTTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
EST: gi|30134835|gb|CB920173.1|CB920173
EST:     AGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATG                         TTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
genomic: AGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATGgtaagttgtt ... ggcaatgcagTTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
EST: gi|110686518|gb|EE064246.1|EE064246
EST:     AGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATG                         TTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
genomic: AGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATGgtaagttgtt ... ggcaatgcagTTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
EST: gi|294965865|gb|GW837348.1|GW837348
EST:     AGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATG                         TTATCAAGCTCCCATTTTTTGGGGCGGTCAAAGTGGTTCATCAAGGCGAGC
genomic: AGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATGgtaagttgtt ... ggcaatgcagTTATCAAGCTCCCATTTTTTGGGGCGGTCAA-GTGGTTCATCAAGGCGAGC
EST: gi|33405239|gb|CF210866.1|CF210866
EST:     AGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATG                         TTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
genomic: AGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATGgtaagttgtt ... ggcaatgcagTTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
EST: gi|34364004|gb|CF405589.1|CF405589
EST:     GCAGAAGAGTCCAGTTGCAAGCGATTGGGCAGTGAGTAAAGATGCTATG                         TTATCAAGCTCCCA-TTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
genomic: GCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATGgtaagttgtt ... ggcaatgcagTTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
EST: gi|71873819|gb|DT022874.1|DT022874
EST:     AGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATG                         TTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
genomic: AGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATGgtaagttgtt ... ggcaatgcagTTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
EST: gi|110393014|gb|EC957796.1|EC957796
EST:     AGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATG                         TTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
genomic: AGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATGgtaagttgtt ... ggcaatgcagTTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
EST: gi|33405325|gb|CF210952.1|CF210952
EST:     AGTGAGTAAAGATGCTATG                         TTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
genomic: AGTGAGTAAAGATGCTATGgtaagttgtt ... ggcaatgcagTTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
EST: gi|27578542|gb|CB001237.1|CB001237
EST:     GAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATG                         TTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT
genomic: GAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATGgtaagttgtt ... ggcaatgcagTTATCAAGCTCCCATTTTTTGGGGCGGTCAAGTGGTTCATCAAGGCGAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATGGACCCTTCTCGTCGGAGAATTTCTGGTGATGGAGGAGGTTTATCCAAGCAGAAGAGTCCAGTTGCAAGCGATTTGGCAGTGAGTAAAGATGCTATGgtaagttgttttgatggtattagaaaaaagtctctatctctctctctatctgtctctgcgtgctcaagtcatcctctggtttgtacaattttaccgatat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc