1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GAGCTGAGATTGGTGGAGCTTTTGGGGGAGAAAAGGCAACTGGTGGTGGTCGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATGgtaatttggtttaaccgtttgattttgttgcgggtgtatgtttcttatatttcgagtattttatcattatgttgcattttttggatttgacaaaagacctataattgttgtccttccacag
species | Vitis vinifera |
transcript | Vv11s0016g00900.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATG TACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGGEST: gi|33405776|gb|CF211403.1|CF211403
genomic: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATGgtaatttggt ... ccttccacagTACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGG
EST: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATG TACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGGEST: gi|351015872|gb|FQ431827.1|FQ431827
genomic: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATGgtaatttggt ... ccttccacagTACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGG
EST: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATG TACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGGEST: gi|349816247|gb|FQ403743.1|FQ403743
genomic: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATGgtaatttggt ... ccttccacagTACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGG
EST: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATG TACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGTTATCAATTTTGGEST: gi|349819677|gb|FQ402614.1|FQ402614
genomic: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATGgtaatttggt ... ccttccacagTACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGG
EST: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATG TACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGGEST: gi|351019460|gb|FQ429595.1|FQ429595
genomic: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATGgtaatttggt ... ccttccacagTACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGG
EST: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATG TACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGGEST: gi|349817443|gb|FQ405447.1|FQ405447
genomic: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATGgtaatttggt ... ccttccacagTACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGG
EST: CGTGAAGCAGGAAGCCACTCCTGGAAACAATACATGCGGCGTTCAACATG TACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGGEST: gi|351027458|gb|FQ444707.1|FQ444707
genomic: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATGgtaatttggt ... ccttccacagTACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGG
EST: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATG TACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGGEST: gi|351033661|gb|FQ462191.1|FQ462191
genomic: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATGgtaatttggt ... ccttccacagTACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGG
EST: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACGTG TACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGG
genomic: CGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATGgtaatttggt ... ccttccacagTACAATCAATTATGGAAATGAGCTACCACTGGCTCAGGGTATCAATTTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCTGAGATTGGTGGAGCTTTTGGGGGAGAAAAGGCAACTGGTGGTGGTCGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATGgtaatttggtttaaccgtttgattttgttgcgggtgtatgtttcttatatttcgagtattttatcattatgttgcattttttggatttgacaaaagacctataattgttgtccttccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC