Sequence
atgc intronic sequence ATGC exonic sequenceGAACCTGATTGAAGCAATGCCAACTTCTCCTATTTTTGTGGGGAATAAGGCAAAGCGGTTGCTAGAGAGAGCTGTCTGGAATGATACTTCATTTCTTGCTgtaagttcagaaactaactgcatgcctcaaaggtttataggtcaccacatgcataatcctcccctttggttttgaatggagccattgctggaattgcctt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g00360.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os08g34950.1 (Oryza sativa), 5'ss of exon 10
GAACCTGATTGAAGCAATGCCAACTTCTCCTATTTTTGTGGGGAATAAGGCAAAGCGGTTGCTAGAGAGAGCTGTCTGGAATGATACTTCATTTCTTGCTgtaagttcagaaactaactgcatgcctcaaag-gtttataggtcaccacatgca-taatcctcccctttggttttgaatggagccattgctggaattgcctt
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GAACTTGATTGAGGCAATGCCAACGTCACCAATTTTCGTTGGGAACAAGGCAAAGAGGCTTCTGGAAAGAGCTGTTTGGAATGATACTTCCTTTCTGGCAgtaagttcagattctgatagtgagaattatctcattcatacatgaatccttgagctaagacttaaaaattattcaatattttcaaatcttcacctttaac--
upper sequence: Vv11s0016g00360.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G153722_T01 (Zea mays), 5'ss of exon 10
GAACCTGATTGAAGCAATGCCAACTTCTCCTATTTTTGTGGGGAATAAGGCAAAGCGGTTGCTAGAGAGAGCTGTCTGGAATGATACTTCATTTCTTGCTgtaagtt--cagaaactaactgcatgcctcaaaggtttataggtcaccacatgcataatcctcccctttggttttgaatggagccattgctggaattgcctt----
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GAACTTAATTGAAGCAATGCCAACTTCACCGATTTTTGTTGGGAACAAGGCAAAGCGGCTACTGGAAAGAGCTGTTTGGAACGATACATCTTTCCTAGCTgtaagtttgcatcaatttatccttctcatcaaag-cttatagg-----aaatgcagtggcttccagagctatcttcaacttcttcttttgttcaacaatcttcagc
upper sequence: Vv11s0016g00360.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA13G17510.1 (Glycine max), 5'ss of exon 10
GAACCTGATTGAAGCAATGCCAACTTCTCCTATTTTTGTGGGGAATAAGGCAAAGCGGTTGCTAGAGAGAGCTGTCTGGAATGATACTTCATTTCTTGCTgtaagttcagaaactaactgcatgcctcaaaggtttataggtcaccacatgcataatcctcccctttggttttgaatggagccattgctggaattgcctt--
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GAATCTCATTGAAGCTATGCCAACCTCTCCAATATTTGTTGGGAACAAGGCAAAACGGTTGCTCGAGAGGGCTGTGTGGAATGATACTGCCTTCCTTGCAgtaagtct-gatgcccttcacaagt-tcaattctttatattctagtatttaggtgtactttcatggattttcttgcaactttcttttccttctttgcttcta
upper sequence: Vv11s0016g00360.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA17G05000.1 (Glycine max), 5'ss of exon 14
GAACCTGATTGAAGCAATGCCAACTTCTCCTATTTTTGTGGGGAATAAGGCAAAGCGGTTGCTAGAGAGAGCTGTCTGGAATGATACTTCATTTCTTGCTgtaagttcagaaactaactgcatgcctcaaaggtttataggtcaccacatgcataatcctcccctttggttttgaatggagccattgctggaattgcctt-------
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GAATCTCATTGAAGCTATGCCAACCTCTCCAATATTTGTTGGGAACAAGGCAAAGCGGTTGCTTGAGAGGGCCGTGTGGAATGACACTGCCTTCCTTGCAgtaagtct-gatgcccttcacaagttt-aattctttacagtctagcatttaggtgtactttca---tggattttcttgcagc--ttccttttccttctttgcaaatt
upper sequence: Vv11s0016g00360.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT4G33240.1 (Arabidopsis thaliana), 5'ss of exon 11
GAACCTGATTGAAGCAATGCCAACTTCTCCTATTTTTGTGGGGAATAAGGCAAAGCGGTTGCTAGAGAGAGCTGTCTGGAATGATACTTCATTTCTTGCTgtaagttcagaaactaactgcatgcctcaaaggtttataggtcaccacatgcataatcctcccctttggttttgaatg---gagccattgctggaattgcctt---------
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GAATCTTGTCGAAGCAATGCCAACATCTCCAATATTTGTTGGGAGCAAGGCAAAACGGCTTCTTGAAAGAGCAGTCTGGAATGATACATCATTTCTTGCTgtaagtttccagttgttactcttcttttaaaccgctttgaaataccgaacttgt--tcttgagctttacatagtaatgctgatgcaagatcttggtttgtttctggctgaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110368632|gb|EC932620.1|EC932620EST: GGTTGCTAGAGAGAGCTGTTTGGAATGATACTTCATTTCTTGCT TCGATAGATGTAATGGACTACTCATTACTGGTTGGGGTGGATGAGGAAAAG
genomic: GGTTGCTAGAGAGAGCTGTCTGGAATGATACTTCATTTCTTGCTgtaagttcag ... gttctttcagTCGATAGATGTAATGGACTACTCATTACTGGTTGGGGTGGATGAGGAAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAACCTGATTGAAGCAATGCCAACTTCTCCTATTTTTGTGGGGAATAAGGCAAAGCGGTTGCTAGAGAGAGCTGTCTGGAATGATACTTCATTTCTTGCTgtaagttcagaaactaactgcatgcctcaaaggtttataggtcaccacatgcataatcctcccctttggttttgaatggagccattgctggaattgcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcccc