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GACAAACTTAATGAAGCTCCGTTCTGATTATAAAGATGCTTTTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAAgtatgcattaggatttgatgtcattcagttcgttactattcaggtgttaacatgtttgtgtgtttgtgttcattcaaaattgcacttttcagtcatgaatcttaattatttttcag
species | Vitis vinifera |
transcript | Vv10s0116g01480.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAA GCTGCTGTTAGTGGGCTCCAGAATCAGCCCATCATCAACACTGTTATGGATEST: gi|110362847|gb|EC926404.1|EC926404
genomic: TTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAAgtatgcatta ... tatttttcagGCTGCTGTTAGTGGGCTCCAGAATCAGCCCATCATCAACGCTGTTATTGAT
EST: TTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAA GCTGCTGTTAGTGGGCTCCAGAATCAGCCCATCATCAACGCTGTTATTGATEST: gi|294964448|gb|GW838251.1|GW838251
genomic: TTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAAgtatgcatta ... tatttttcagGCTGCTGTTAGTGGGCTCCAGAATCAGCCCATCATCAACGCTGTTATTGAT
EST: TTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAA GCTGCTGTTAGTGGGCTCCAGAATCAGCCCATCATCAATGCTGTTATTGATEST: gi|71864219|gb|DT013274.1|DT013274
genomic: TTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAAgtatgcatta ... tatttttcagGCTGCTGTTAGTGGGCTCCAGAATCAGCCCATCATCAACGCTGTTATTGAT
EST: TTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAA GCTGCTGTTAGTGGGCTCCAGAATCAGCCCATCATCAACGCTGTTATTGATEST: gi|71868220|gb|DT017275.1|DT017275
genomic: TTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAAgtatgcatta ... tatttttcagGCTGCTGTTAGTGGGCTCCAGAATCAGCCCATCATCAACGCTGTTATTGAT
EST: TTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAA GCTGCTGTTAGTGGGCTCCAGAATCAGCCCATCATCAACGCTGTTATTGATEST: gi|37189774|gb|CF609123.1|CF609123
genomic: TTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAAgtatgcatta ... tatttttcagGCTGCTGTTAGTGGGCTCCAGAATCAGCCCATCATCAACGCTGTTATTGAT
EST: TTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAA GCTGCTGTTAGTGGGCTCCAGAATCAGCCCATCATCAACGCTGTTATTGATEST: gi|110729049|gb|EE105210.1|EE105210
genomic: TTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAAgtatgcatta ... tatttttcagGCTGCTGTTAGTGGGCTCCAGAATCAGCCCATCATCAACGCTGTTATTGAT
EST: TTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAA GCTGCTGTTAGTGGGCTCCAGAATCAGCCCATCATCAACGCTGTTATTGATEST: gi|110718184|gb|EE094729.1|EE094729
genomic: TTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAAgtatgcatta ... tatttttcagGCTGCTGTTAGTGGGCTCCAGAATCAGCCCATCATCAACGCTGTTATTGAT
EST: TTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAA GCTGCTGTTAGTGGGCTCCAGAATCAGCCCATCATCAACGCTGTTATTGAT
genomic: TTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAAgtatgcatta ... tatttttcagGCTGCTGTTAGTGGGCTCCAGAATCAGCCCATCATCAACGCTGTTATTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAAACTTAATGAAGCTCCGTTCTGATTATAAAGATGCTTTTCTTGAGAAGCATGGAGTGAAGTTGGGGCTGATGTCTGGATTTATTAAAgtatgcattaggatttgatgtcattcagttcgttactattcaggtgttaacatgtttgtgtgtttgtgttcattcaaaattgcacttttcagtcatgaatcttaattatttttcag
- - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT