1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCCTTGAAGGCCAGTTGGAGGACCCTCGGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCCgtgagttcctttcttctttaccttgttattgtggatattttgaccaattctcttaacagttttaaacctgtgtcgattaaaatttatattgaatgatgct...
species | Vitis vinifera |
transcript | Vv10s0003g04100.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCC GGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGTEST: gi|110362061|gb|EC925568.1|EC925568
genomic: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCCgtgagttcct ... gttttaccagGGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGT
EST: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCC GGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGTEST: gi|30126631|gb|CB911970.1|CB911970
genomic: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCCgtgagttcct ... gttttaccagGGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGT
EST: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCC GGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGTEST: gi|110725721|gb|EE102546.1|EE102546
genomic: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCCgtgagttcct ... gttttaccagGGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGT
EST: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCC GGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGTEST: gi|110381261|gb|EC946584.1|EC946584
genomic: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCCgtgagttcct ... gttttaccagGGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGT
EST: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCC GGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGTEST: gi|110419857|gb|EC986111.1|EC986111
genomic: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCCgtgagttcct ... gttttaccagGGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGT
EST: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCC GGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGTEST: gi|110387765|gb|EC952459.1|EC952459
genomic: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCCgtgagttcct ... gttttaccagGGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGT
EST: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCC GGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTAEST: gi|110386444|gb|EC951038.1|EC951038
genomic: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCCgtgagttcct ... gttttaccagGGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTA
EST: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCC GGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGTEST: gi|110424359|gb|EC990717.1|EC990717
genomic: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCCgtgagttcct ... gttttaccagGGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGT
EST: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCC GGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGT
genomic: TTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCCgtgagttcct ... gttttaccagGGAGTTTGTAAACAGCGTGTGGTGTATCAAGATACTCTCACTACAGGAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTTGAAGGCCAGTTGGAGGACCCTCGGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCCTGGCCgtgagttcctttcttctttaccttgttattgtggatattttgaccaattctcttaacagttttaaacctgtgtcgattaaaatttatattgaatgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attaaaa