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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGGCGACATTGAGTTACAAAATGTCAGCTTTAGATATTCAACAAGGCCAGACGTTCAAATTTTCAGGGACTTGTGCTTGAGCATCCCCTCTGGAAAGgtactcgctattgttcgacccaacttcaataggtgtatgtatatatcattttttttgtctcatttatcagttatttgcctgcag

Basic information

species Vitis vinifera
transcript Vv10s0003g02570.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02570.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os05g47500.1 (Oryza sativa), 5'ss of exon 12
GAAGGGCGACATTGAGTTACAAAATGTCAGCTTTAGATATTCAACAAGGCCAGACGTTCAAATTTTCAGGGACTTGTGCTTGAGCATCCCCTCTGGAAAGgtactcgctattgttcgacccaacttcaataggtgtatgtatatatcattttt------tttgtctcatttatcagttatttgcctgcag--------------
 ||||| |||||||| ||     || |||| || |||||  || |  | ||||| |||||||| ||||| |||||   |||||||||||||||||| |||||  |   |         || || ||    |    | | |  || |  |||||      |||   | |||   |||  | |  |    |               
CAAGGGTGACATTGAATTTACGCATATCAGTTTCAGATACCCATCCCGTCCAGATGTTCAAATCTTCAGTGACTTTACCTTGAGCATCCCCTCTGGGAAGgtcttaatttaacagaagcctaattttgtcaatgttctctcaatttttttttttgaagatttagtttattgtccagggactaactcaaaacctgcttattgcag

upper sequence: Vv10s0003g02570.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT4G18050.1 (Arabidopsis thaliana), 5'ss of exon 11
GAAGGGCGACATTGAGTTACAAAATGTCAGCTTTAGATATTCAACAAGGCCAGACGTTCAAATTTTCAGGGACTTGTGCTTGAGCATCCCCTCTGGAAAGgtactcgctattgttcgacccaacttcaataggtgtatgtatatatcattttttttgtctcatttatcagttatttgcctgcag
 || || || || || || | | |||| || ||  ||||  |||   | || |||||||| |||||||| || ||||||||||  ||||| ||||||||||||      |  | |      || |   |  ||| ||  | |   |||    ||   | |   ||||  ||| |||   | |||
TAATGGTGATATCGAATTCCGACATGTTAGTTTCCGATACCCAATGCGACCGGACGTTCAGATTTTCAGAGATTTGTGCTTGACTATCCCTTCTGGAAAGgtaaaaaacagagctt--tttaatt---accggt-taaatctggttcaccggtta-atattggttattggttgttt--tttcag