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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATTGTCTATGTTGTTGATAGTGGGTTCTCAAAACAGCGATTTTATAATCCGgtatctttcatttcattttttgggtatgcgcagtgtgtaatggaatgctttgttaccacaccagtatagaatcttcaacttccttgtcctacataatcag...

Basic information

species Vitis vinifera
transcript Vv10s0003g00810.t01
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18458301|gb|BM436579.1|BM436579
EST:     TTGTCTATGTTGTTGATAGTGGGTTCTCAAAACAGCGATTTTATAATCCG                         ATATCAGATATTGAAAATTTGGTTGTGGCACCAATATCCAAGGCATCTGCT
genomic: TTGTCTATGTTGTTGATAGTGGGTTCTCAAAACAGCGATTTTATAATCCGgtatctttca ... tttgttatagATATCAGATATTGAAAATTTGGTTGTGGCACCGATATCCAAGGCATCTGCT
EST: gi|30320990|gb|CD004252.1|CD004252
EST:     TTGTCTATGTTGTTGATAGTGGGTTCTCAAAACAGCGATTTTATAATCCG                         ATATCAGATATTGAAAATTTGGTTGTGGCACCAATATCCAAGGCATCTGCT
genomic: TTGTCTATGTTGTTGATAGTGGGTTCTCAAAACAGCGATTTTATAATCCGgtatctttca ... tttgttatagATATCAGATATTGAAAATTTGGTTGTGGCACCGATATCCAAGGCATCTGCT
EST: gi|33401544|gb|CF207171.1|CF207171
EST:     TTGTCTATGTTGTCGATAGTGGGTTCTCAAAACAACGATTTTATAATCCG                         ATATCAGATATTGAAAATTTGGTTGTGGCACCGATATCCAAGGCGTCTGCT
genomic: TTGTCTATGTTGTTGATAGTGGGTTCTCAAAACAGCGATTTTATAATCCGgtatctttca ... tttgttatagATATCAGATATTGAAAATTTGGTTGTGGCACCGATATCCAAGGCATCTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCATTGTCTATGTTGTTGATAGTGGGTTCTCAAAACAGCGATTTTATAATCCGgtatctttcatttcattttttgggtatgcgcagtgtgtaatggaatgctttgttaccacaccagtatagaatcttcaacttccttgtcctacataatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatggaat