1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AGAGCTAGCTAGGGCTACTATGAAGAAGTTAACTCAGGGAATGGCTGAGCACAATAAAGCAATGGCTGCTGCTAAATCTGATGAAGCAAAGGATAACATTgtaagtttactatttgaaacttgtgtggtctcctgttgagatattcatttgttgtgtcacttaccactttattcctccataatctacag
species | Vitis vinifera |
transcript | Vv10s0003g00670.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AGCAAAGGATAACATT AAAACCCAAAAGCAGAATACTACAACTGGTTTGAGAACCTGCAATAACATTEST: gi|110362029|gb|EC925536.1|EC925536
genomic: AGCAAAGGATAACATTgtaagtttac ... taatctacagAAAACCCAAAAGCAGAATACTACAACTGGTTTGAGAACCTGCAATAACATT
EST: ACAATAAAGCAATGGCTGCTGCTAAATCTGATGAAGCAAAGGATAACATT AAAACCCAAAAGCAGAATACTACAACTGGTTTGAGAACCTGCAATAACATTEST: gi|110384203|gb|EC948624.1|EC948624
genomic: ACAATAAAGCAATGGCTGCTGCTAAATCTGATGAAGCAAAGGATAACATTgtaagtttac ... taatctacagAAAACCCAAAAGCAGAATACTACAACTGGTTTGAGAACCTGCAATAACATT
EST: ACAATAAAGCAATGGCTGCTGCTAAATCTGATGAAGCAAAGGATAACATT AAAACCCAAAAGCAGAATACTACAACTGGTTTGAGAACCTGCAATAACATT
genomic: ACAATAAAGCAATGGCTGCTGCTAAATCTGATGAAGCAAAGGATAACATTgtaagtttac ... taatctacagAAAACCCAAAAGCAGAATACTACAACTGGTTTGAGAACCTGCAATAACATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGCTAGCTAGGGCTACTATGAAGAAGTTAACTCAGGGAATGGCTGAGCACAATAAAGCAATGGCTGCTGCTAAATCTGATGAAGCAAAGGATAACATTgtaagtttactatttgaaacttgtgtggtctcctgttgagatattcatttgttgtgtcacttaccactttattcctccataatctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG