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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTATGAAGCAGAGCAAAAACTTGAAGAGAGAGAGAGACATCCTGTCAATCACAGGGACAAACATCTACTCCATCCAgtaagttctataatccattagttaatatagttaatttttgttatgttttggtcaactatttgaaggttacatcaatgcttatttgcaatattctgatcagaaaattgagcttgctaaaccctgcag

Basic information

species Vitis vinifera
transcript Vv09s0054g01780.t01
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34542459|gb|CF510691.1|CF510691
EST:     NNNNNNNNNNNCATCCTGTCAATCACAGGGACAAACATCTACTCCATCCA                         GTTGAAATCAACGACGTACCTTCAGATACTAAGGATAAGGATGAGATTCTG
genomic: AGAGAGAGAGACATCCTGTCAATCACAGGGACAAACATCTACTCCATCCAgtaagttcta ... aaccctgcagGTTGAAATCAACGACGTACCTTCAGATACTAAGGATAAGGATGAGATTCTG
EST: gi|34549540|gb|CF517772.1|CF517772
EST:     NNNNNNNNNNNCATCCTGTCAATCACAGGGACAAACATCTACTCCATCCA                         GTTGAAATCAACGACGTACCTTCAGATACTAAGGATAAGGATGAGATTCTG
genomic: AGAGAGAGAGACATCCTGTCAATCACAGGGACAAACATCTACTCCATCCAgtaagttcta ... aaccctgcagGTTGAAATCAACGACGTACCTTCAGATACTAAGGATAAGGATGAGATTCTG