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TATAGCTGAATACTTCAGAGATATGGGCTACAATGTTAGTATGATGGCAGATTCAACATCTCGATGGGCAGAGGCATTGCGAGAAATATCAGGACGGCTGgtaagtccttctcagttttagcttatgtggaagtttctgttgattttagaaattaccttttaatgcttcatatgtgatgggggaaagccttttaaagttt...
species | Vitis vinifera |
transcript | Vv09s0054g00890.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ATTCAACATCTCGATGGGCAGAGGCATTGCGAGAAATATCAGGACGGCTG GCTGAGATGCCTGCGGATAGTGGATATCCTGCTTATTTGGCAGCACGTTTAEST: gi|110715176|gb|EE092929.1|EE092929
genomic: ATTCAACATCTCGATGGGCAGAGGCATTGCGAGAAATATCAGGACGGCTGgtaagtcctt ... tctcaaaaagGCTGAGATGCCTGCGGATAGTGGCTATCCTGCTTATTTGGCAGCACGTTTA
EST: ATTCAACATCTCGATGGGCAGAGGCATTGCGAGAAATATCAGGACGGCTG GCTGAGATGCCTGCGGATAGTGGATATCCTGCTTATTTGGCAGCACGTTTAEST: gi|110707093|gb|EE083190.1|EE083190
genomic: ATTCAACATCTCGATGGGCAGAGGCATTGCGAGAAATATCAGGACGGCTGgtaagtcctt ... tctcaaaaagGCTGAGATGCCTGCGGATAGTGGCTATCCTGCTTATTTGGCAGCACGTTTA
EST: ATTCAACATCTCGATGGGCAGAGGCATTGCGAGAAATATCAGGACGGCTG GCTGAGATGCCTGCGGATAGTGGATATCCTGCTTATTTGGCAGCACGTTTAEST: gi|37189190|gb|CF608539.1|CF608539
genomic: ATTCAACATCTCGATGGGCAGAGGCATTGCGAGAAATATCAGGACGGCTGgtaagtcctt ... tctcaaaaagGCTGAGATGCCTGCGGATAGTGGCTATCCTGCTTATTTGGCAGCACGTTTA
EST: ATTC-ACATCTCGATGGGCAGAGGCATTGCGAGAAATATCAGGACGGCTG GCTGAGATGCCTGCGGATAGTGGCTATCCTGCTTATTTGGCAGCACGTTTAEST: gi|110692053|gb|EE070859.1|EE070859
genomic: ATTCAACATCTCGATGGGCAGAGGCATTGCGAGAAATATCAGGACGGCTGgtaagtcctt ... tctcaaaaagGCTGAGATGCCTGCGGATAGTGGCTATCCTGCTTATTTGGCAGCACGTTTA
EST: ATTCAACATCTCGATGGGCAGAGGCATTGCGAGAAATATCAGGACGGCTG GCTGAGATGCCTGCGGATAATGGATATCCTGCTTATTTGGCAGCACGTTTA
genomic: ATTCAACATCTCGATGGGCAGAGGCATTGCGAGAAATATCAGGACGGCTGgtaagtcctt ... tctcaaaaagGCTGAGATGCCTGCGGATAGTGGCTATCCTGCTTATTTGGCAGCACGTTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATAGCTGAATACTTCAGAGATATGGGCTACAATGTTAGTATGATGGCAGATTCAACATCTCGATGGGCAGAGGCATTGCGAGAAATATCAGGACGGCTGgtaagtccttctcagttttagcttatgtggaagtttctgttgattttagaaattaccttttaatgcttcatatgtgatgggggaaagccttttaaagttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaaag