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AAACCAGACTATGGTCGTTGTGTTGCCATTGTAGCATCTGCATCTCTGAGGGAGATGATAAAACCCGGTGCTTTGGCTATTGTATCACCTATAGTGGTTGgtgggtcatctgctctttgttcgttagccttttgtcatgctcaagaaaaaattgttgttattgttgctctagcagttatggaacatcatgtttttgcatt...
species | Vitis vinifera |
transcript | Vv09s0054g00700.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TTGGCTATTGTATCACCTATAGTGGCTG TEST: gi|110389581|gb|EC954434.1|EC954434
genomic: TTGGCTATTGTATCACCTATAGTGGTTGgtgggtcatc ... tcccttgcag-
EST: TTGGCTATTGTATCACCTATAGTGGCTG TEST: gi|37188469|gb|CF607818.1|CF607818
genomic: TTGGCTATTGTATCACCTATAGTGGTTGgtgggtcatc ... tcccttgcag-
EST: GGAGATGATAAAACCCGGTGCTTTGGCTATTGTATCACCTATAGTGGTTG GCTTTCTGTTCCGGATTTTGGGATACTACACCGGACATCCTCTACTCGGGG
genomic: GGAGATGATAAAACCCGGTGCTTTGGCTATTGTATCACCTATAGTGGTTGgtgggtcatc ... tcccttgcagGCTTTCTGTTCCGGATTTTGGGATACTACACCGGACATCCTCTACTCGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACCAGACTATGGTCGTTGTGTTGCCATTGTAGCATCTGCATCTCTGAGGGAGATGATAAAACCCGGTGCTTTGGCTATTGTATCACCTATAGTGGTTGgtgggtcatctgctctttgttcgttagccttttgtcatgctcaagaaaaaattgttgttattgttgctctagcagttatggaacatcatgtttttgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat