1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTTAACTGGCAACAAGACATACCAAGAGTGGGGTTGGAACATATTTCAAGCATTTGAAAAGAACTCCCGCATAGAGTCAGGATACGTTGGACTGAAGGATgtaagtacactcttcaaactcactaatccctacttcagactgactgattcgcatttttagcatttacttttgaactttgattcctgaaatcttagaaaat...
species | Vitis vinifera |
transcript | Vv09s0054g00370.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CATTTGAAAAGAACTCCCGCATAGAGTCAGGATACGTTGGACTGAAGGAT GTAAATAGCGGTGTCAAAGACAATATGATGCAAAGCTTCTTCCTTGCTGAGEST: gi|110415337|gb|EC981235.1|EC981235
genomic: CATTTGAAAAGAACTCCCGCATAGAGTCAGGATACGTTGGACTGAAGGATgtaagtacac ... gtattcacagGTAAATAGCGGTGTCAAAGACAATATGATGCAAAGCTTCTTCCTTGCTGAG
EST: CATTTGAAAAGAACTCCCGCATAGAGTCAGGATACGTTGGACTGAAGGAT GTAAATAGCGGTGTCAAAGACAATATGATGCAAAGCTTCTTCCTTGCTGAGEST: gi|77586886|gb|DV222591.1|DV222591
genomic: CATTTGAAAAGAACTCCCGCATAGAGTCAGGATACGTTGGACTGAAGGATgtaagtacac ... gtattcacagGTAAATAGCGGTGTCAAAGACAATATGATGCAAAGCTTCTTCCTTGCTGAG
EST: CATTTGAAAAGAACTCCCGCATAGAGTCAGGATACGTTGGACTGAAGGAT GTAAATAGCGGTGTCAAAGACAATATGATGCAAAGCTTCTTCCTTGCTGAGEST: gi|33402283|gb|CF207910.1|CF207910
genomic: CATTTGAAAAGAACTCCCGCATAGAGTCAGGATACGTTGGACTGAAGGATgtaagtacac ... gtattcacagGTAAATAGCGGTGTCAAAGACAATATGATGCAAAGCTTCTTCCTTGCTGAG
EST: CATTTGAAAAGAACTCCCGCATAGAGTCAGGATACGTTGGACTGAAGGAT GTAAATAGCGGTGTCAAAGACAATATGATGCAAAGCTTCTTCCTTGCTGAGEST: gi|110382080|gb|EC938428.1|EC938428
genomic: CATTTGAAAAGAACTCCCGCATAGAGTCAGGATACGTTGGACTGAAGGATgtaagtacac ... gtattcacagGTAAATAGCGGTGTCAAAGACAATATGATGCAAAGCTTCTTCCTTGCTGAG
EST: GTTGGACTGAAGGAT GTAAATAGCGGTGTCAAAGACAATATGATGCAAAGCTTCTTCCTTGCTGAGEST: gi|352763646|gb|FQ473349.1|FQ473349
genomic: GTTGGACTGAAGGATgtaagtacac ... gtattcacagGTAAATAGCGGTGTCAAAGACAATATGATGCAAAGCTTCTTCCTTGCTGAG
EST: CATTTGAAAAGAACTCCCGCATAGAGTCAGGATACGTTGGACTGAAGGAT GTAAATAGCGGTGTCAAAGACAATATGATGCAAAGCTTCTTCCTTGCTGAGEST: gi|71863682|gb|DT012737.1|DT012737
genomic: CATTTGAAAAGAACTCCCGCATAGAGTCAGGATACGTTGGACTGAAGGATgtaagtacac ... gtattcacagGTAAATAGCGGTGTCAAAGACAATATGATGCAAAGCTTCTTCCTTGCTGAG
EST: CATTTGAAAAGAACTCCCGCATAGAGTCAGGATACGTTGGACTGAAGGAT GTAAATAGCGGTGTCAAAGACAATATGATGCAAAGCTTCTTCCTTGCTGEST: gi|352781335|gb|FQ467781.1|FQ467781
genomic: CATTTGAAAAGAACTCCCGCATAGAGTCAGGATACGTTGGACTGAAGGATgtaagtacac ... gtattcacagGTAAATAGCGGTGTCAAAGACAATATGATGCAAAGCTTCTTCCTTGCTG
EST: CATTTGAAAAGAACTCCCGCATAGAGTCCGGATACGTTGGACTGAAGGAT GTAAATAGCGGTGTCAAAGACAATATGATGCAAAGCTTCTTCCTTGCTGAG
genomic: CATTTGAAAAGAACTCCCGCATAGAGTCAGGATACGTTGGACTGAAGGATgtaagtacac ... gtattcacagGTAAATAGCGGTGTCAAAGACAATATGATGCAAAGCTTCTTCCTTGCTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAACTGGCAACAAGACATACCAAGAGTGGGGTTGGAACATATTTCAAGCATTTGAAAAGAACTCCCGCATAGAGTCAGGATACGTTGGACTGAAGGATgtaagtacactcttcaaactcactaatccctacttcagactgactgattcgcatttttagcatttacttttgaactttgattcctgaaatcttagaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagaaaa