Sequence
atgc intronic sequence ATGC exonic sequenceGTGTGGGATGCCACTAATGGAACTAAACAGTATACTTTTGAAGGCCATGAGGATGCAGTTTATTCTGTCTGCCCCCACTATAAGGAGAATATTCAGgtaacaagtccattagctttggctattctaagtttgtcatgttttttcgccttcctgtaactactttcttctgtcatcccttggtcctgatgttctgtttgtgcttttatgcttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA08G22910.2 (Glycine max), 5'ss of exon 14
GTGTGGGATGCCACTAATGGAACTAAACAGTATACTTTTGAAGGCCATGAGGATGCAGTTTATTCTGTCTGCCCCCACTATAAGGAGAATATTCAGgtaacaa----gtccattagctttgg--ctatt--ctaagtttgtcatgttttttcgccttcctgta--actactttcttctgtcatcccttggtc-ctgatgttctgtttgtgcttttatgcttcag-----------------------------------------
|| |||||||| || || | || ||||||||||||||||| ||||||| | | ||||||||||||||||| || ||||| || || ||||||||| || | | || |||||| | || | ||||||| | |||| ||| | | || | | | |||||| | | | | ||| | ||| | | |
GTATGGGATGCTGCTTCGGGTGCAAAGCAGTATACTTTTGAAGGTCATGAGGCTCCTGTTTATTCTGTCTGCCCACATTATAAAGAAAACATTCAGgtacaaattgacttctgtacctttgggattgttagttgagtttgttggcatgtttccttcagctgcattaatatatatgaatataatccctccccctcccaaaagttacttggccattttttttctggttggttttcttactgatggtcattgtcttgtgatgttgtag
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA15G00880.1 (Glycine max), 5'ss of exon 13
GTGTGGGATGCCACTAATGGAACTAAACAGTATACTTTTGAAGGCCATGAGGATGCAGTTTATTCTGTCTGCCCCCACTATAAGGAGAATATTCAGgtaacaagtccatt-----agctttggc----tatt--ctaagtttgtcat-------gttttttcgccttcctgtaactactttcttctgtcatcccttggtcctgatgttctgtttgtgcttttat---gcttcag-------------
|| |||||||| ||| || | |||||||||||||| ||||| ||||| | | |||||||||||||||| || || ||||| || || ||||||||| ||||| | | | || ||| | || || ||||||| | | ||| ||| | || | | | | |||| | | | | || || || | || | |||
GTTTGGGATGCTGCTACGGGTGCGAAACAGTATACTTTCGAAGGTCATGAAGCTCCAGTTTATTCTGTCTGTCCGCATTATAAAGAAAACATTCAGgta-caagttgactttgatacctatgggaaaatgttggctgagtttgttgtcatatgattcctttagccctattggtagagtgccccatagaaaatcctttgactatgtttcctattcgttttcttgttgaaattcttttttatgctatag
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA13G44420.2 (Glycine max), 5'ss of exon 14
GTGTGGGATGCCACTAATGGAACTAAACAGTATACTTTTGAAGGCCATGAGGATGCAGTTTATTCTGTCTGCCCCCACTATAAGGAGAATATTCAGgtaacaagtccatt-----agctttggctattc-taagtttgtcatgttttttcgcc-ttcctgtaactactttcttctgtcatcccttgg----tcct-----gatgttctgtttgtgcttttatgcttcag------------------
|| |||||||| ||| || | |||||||||||||| ||||| ||||||| | ||||||||||| |||| || || ||||| || || ||||||||| ||||| | | | || ||| | | | ||| ||||| ||||| || | || | ||| | | |||| ||||| | | ||| || | |
GTTTGGGATGCTGCTACGGGTGCGAAACAGTATACTTTCGAAGGTCATGAGGCTCCAGTTTATTCTATCTGTCCGCATTATAAAGAAAACATTCAGgta-caagttgactttgatacctatgggaaaacgttggttgagtttgtttccatatgattcctttagccctattggtagagtgccccatagaaaatcctttgacaatgtttctaattcgttttcttgttgaaactctttcttatgctatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857073|gb|DT006128.1|DT006128EST: ATGAGGATGCAGTTTATTCTGTCTGCCCCCACTATAAGGAGAATATTCAG TTTATCTTTTCAACAGCACTTGATGGGAAGATAAAAGCATGGTTATATGAT
genomic: ATGAGGATGCAGTTTATTCTGTCTGCCCCCACTATAAGGAGAATATTCAGgtaacaagtc ... tatgcttcagTTTATCTTTTCAACAGCACTTGATGGGAAGATAAAAGCATGGTTATATGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTGGGATGCCACTAATGGAACTAAACAGTATACTTTTGAAGGCCATGAGGATGCAGTTTATTCTGTCTGCCCCCACTATAAGGAGAATATTCAGgtaacaagtccattagctttggctattctaagtttgtcatgttttttcgccttcctgtaactactttcttctgtcatcccttggtcctgatgttctgtttgtgcttttatgcttcag
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA