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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTGCTGGAGAACTTGAACTAAACCATGAGTGTAATTTGATGCACTGGTCCCCTGAGGACTTTGAATCTAAATTACAGgtgaagccctatatatatatatatgtattatattcatccttattgggcatgagttattttactgtgaatagcttctggagtttcttataactgcaaggtg...

Basic information

species Vitis vinifera
transcript Vv09s0002g02530.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA08G20930.2 (Glycine max), 5'ss of exon 14
GTTGCTGCTGGAGAACTTGAACTAAACCATGAGTGTAATTTGATGCACTGGTCCCCTGAGGACTTTGAATCTAAATTACAGgtgaagccctatatatatatatatgtattatattcatccttattgggcatgagttatttta--ctgtgaatagcttctggagtttcttataactgcaaggtg-
||||  ||||||||||||||||| || ||||| || | ||||||||||||||| || |||||||||||||||||||| |||||  ||   | |  |   |  |     |   | ||||     |||    | |   ||| ||    ||   ||| || |    ||   ||   || |    || 
GTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGGTCACCAGAGGACTTTGAATCTAAATTGCAGgt--agttttgtgaaatcaattgcccttacaaatcatatagtttgccttttaagaattgtaaatggttgctaggtt-tattattatgtagttctacgtcatgt

upper sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA07G01510.2 (Glycine max), 5'ss of exon 14
GTTGCTGCTGGAGAACTTGAACTAAACCATGAGTGTAATTTGATGCACTGGTCCCCTGAGGACTTTGAATCTAAATTACAGgtgaagccctatatatatatatatgtattatattcatccttattgggcatgagttattttactgtgaatagcttctggagtttcttataactgcaaggtg--------
||||  ||||||||||||||||| || ||||| || | ||||||||||||||| || |||||||||||||||||||| |||||  ||   | |  | ||  ||   | ||| |   |  | ||| ||       |||    ||||| ||| | | ||  ||||| |||| |       ||         
GTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGGTCACCGGAGGACTTTGAATCTAAATTGCAGgt--agttttgtgaa-atcaattgctcttaca---aatcatataggtttccttttaaga-actgtaaatggttgcta-agtttattattatgtagttgtactcaatgt

upper sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA09G28010.1 (Glycine max), 5'ss of exon 5
GTTGCTGCTGGAGAACTTGAACTAAACCATGAGTGTAATTTGATGCACTGGTCCCCTGAGGACTTTGAATCTAAATTACAGgtgaagccctatatatatatatatgtattatattcatccttattgggcatgagttattttactgtgaatagcttctggagtttcttataactgcaaggtg
||||  ||||||||||||||||| || || || || | ||||||||||||||| || |||||||||||||||||||| || ||  ||   | |  ||  |    | |   | || |||     |||    | |   |||     || ||| | | || | |||| |||| | || |     
GTTGTGGCTGGAGAACTTGAACTGAATCACGAATGCAGTTTGATGCACTGGTCACCAGAGGACTTTGAATCTAAATTGCAAgt--agttttgtgaatcaactgctcttacaaat-catatagtttgccttttaagaatt-----gtaaatggttgctag-gtttattatta-tgtag----

upper sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA16G32870.1 (Glycine max), 5'ss of exon 6
GTTGCTGCTGGAGAACTTGAACTAAACCATGAGTGTAATTTGATGCACTGGTCCCCTGAGGACTTTGAATCTAAATTACAGgtgaagccctatatatatatatatgtattatattcatccttattgggcatgagttattttactgtgaatagcttctggagtttcttataactgcaaggtg
||||  ||||||||||||||||| || || || || | |||||| |||||||| || ||||||||||||| |||||| || ||  ||   | |  ||  ||   | ||  | || |||     |||    | |   |||     || ||| | | || | |||| |||| | || | | ||
GTTGTGGCTGGAGAACTTGAACTGAATCACGAATGCAGTTTGATACACTGGTCACCAGAGGACTTTGAATgtaaattgcaagt--agtttttttaatcgattgctctaacaaat-catatagtttgccttttaagaatt-----gtaaatggttgctag-gtttattatta-tgta-gttg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352776720|gb|FQ472607.1|FQ472607
EST:     AGTGTAATTTGATGCACTGGTCCCCTGAGGACTTTGAATCTAAATTACAG                         GAAGCTATGAAGCAGACGTACCAGAGAGCTCTCAAAGCAGCAGCTGATTTT
genomic: AGTGTAATTTGATGCACTGGTCCCCTGAGGACTTTGAATCTAAATTACAGgtgaagccct ... tttcttgcagGAAGCTATGAAGCAGACGTACCAGAGAGCTCTCAAAGCAGCAGCTGATTTT
EST: gi|352768323|gb|FQ469498.1|FQ469498
EST:     AGTGTAATTTGATGCACTGGTCCCCTGAGGACTTTGAATCTAAATTACAG                         GAAGCTATGAAGCAGACGTACCAGAGAGCTCTCAAAGCAGCAGCTGATTTT
genomic: AGTGTAATTTGATGCACTGGTCCCCTGAGGACTTTGAATCTAAATTACAGgtgaagccct ... tttcttgcagGAAGCTATGAAGCAGACGTACCAGAGAGCTCTCAAAGCAGCAGCTGATTTT
EST: gi|352776730|gb|FQ472617.1|FQ472617
EST:     AGTGTAATTTGATGCACTGGTCCCCTGAGGACTTTGAATCTAAATTACAG                         GAAGTTATGAAGCAGACGTACCAGAGAGCTCTCAAAGCAGCAGCTGATTTT
genomic: AGTGTAATTTGATGCACTGGTCCCCTGAGGACTTTGAATCTAAATTACAGgtgaagccct ... tttcttgcagGAAGCTATGAAGCAGACGTACCAGAGAGCTCTCAAAGCAGCAGCTGATTTT
EST: gi|352774062|gb|FQ474585.1|FQ474585
EST:     AGTGTAATTTGATGCACTGGTCCCCTGAGGACTTTGAATCTAAATTACAG                         GAAGCTATGAAGCAGACGTACCAGAGAGCTCTCAAAGCAGCAGCTGATTTT
genomic: AGTGTAATTTGATGCACTGGTCCCCTGAGGACTTTGAATCTAAATTACAGgtgaagccct ... tttcttgcagGAAGCTATGAAGCAGACGTACCAGAGAGCTCTCAAAGCAGCAGCTGATTTT