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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGATCATATACTGGGTTTCTTTAGAATCTGGGAGCTTCCAGAGCATGCTATGACAGGTCTAGTTGGAAAGTTCCGACCATCTATCCCTCTAAGTCAGgtactgccatgccagcctaatacaaatagttagattttctatacaaaaaatgagggcaagagtggtttagttgttaagataatgtaaatccattcatgttcttttaggcaattcactccaaaataatgctcctgttgtag

Basic information

species Vitis vinifera
transcript Vv08s0040g00670.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00670.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os07g46790.1 (Oryza sativa), 5'ss of exon 14
AATTGATCATATACTGGGTTTCTTTAGAATCTGGGAGCTTCCAGAGCATGCTATGACAGGTCTAGTTGGAAAGTTCCGACCATCTATCCCTCTAAGTCAGgtactgccatgccagcctaatacaaatagttagattttctatacaaaaaatgagggcaagagtggtttagttgttaagataatgtaaatccattcatgttcttttaggcaattcactccaaaataatgctcctgttgtag
 || || |||||  ||||||||||||| || |||||||||||||| |||||    |||||||||||||| || ||  | || || ||  |||| ||||||||       |||     | | |||||     |||   |    | | |   ||| |   |      |||  ||  || | | || |  |                                                    
GATAGACCATATCTTGGGTTTCTTTAGGATATGGGAGCTTCCAGATCATGCAGCCACAGGTCTAGTTGGGAAATTTAGGCCTTCAATTGCTCTCAGTCAGgttggtttctgcagctgttaaacaaactaaaagagact----agagagcctgaagtttatctgacttt--ttcctatgttgattttcag---------------------------------------------------

upper sequence: Vv08s0040g00670.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G136803_T02 (Zea mays), 5'ss of exon 4
AATTGATCATATACTGGGTTTCTTTAGAATCTGGGAGCTTCCAGAGCATGCTATGACAGGTCTAGTTGGAAAGTTCCGACCATCTATCCCTCTAAGTCAGgtactgccatgccagcctaatacaaatagttagattttctatacaaaaaatgagggcaagagtggtttagttgttaagataatgtaaatccattcatgttcttttaggcaattcactccaaaataatgctcctgttgtag
 || || || ||  ||||||||||||| || |||||||||||||| ||||||   |||||| ||||||| || ||  |||| || |||||||| ||||||||           ||  |            |  |  |  |   |||| ||   |||| ||||   | |        || | || |||  |  ||| |   |||  ||                                 
GATAGACCACATCTTGGGTTTCTTTAGGATATGGGAGCTTCCAGATCATGCTGCAACAGGTTTAGTTGGGAAATTTAGACCTTCCATCCCTCTTAGTCAGgt----------tagttt-----------ctgtacctgttgagcaaacaaaatgggccagagaaatctgtcgaagtagtttatctaa--ctgttcttaa-cttccag---------------------------------

upper sequence: Vv08s0040g00670.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA19G30580.1 (Glycine max), 5'ss of exon 15
AATTGATCATATACTGGGTTTCTTTAGAATCTGGGAGCTTCCAGAGCATGCTATGACAGGTCTAGTTGGAAAGTTCCGACCATCTATCCCTCTAAGTCAGgtactgccatgccagcctaatacaaatagttagattttctatacaa-aaaatgagggcaagagtggtttagttgttaagataatgtaaatccattcatgttcttttaggcaattcactccaaaataatgctcctgttgtag
 |||||||| ||  |||| |||||  |||| ||||| ||||| || ||||||  ||||||||| |||||||| |||||||||||||| ||||| |||||||||    | ||      |||    ||  |  |     |  || ||   ||||| |  |   | || | ||  |   || |||      ||   ||  ||| ||||||| ||||| |      | |       |||||||||
GATTGATCACATTTTGGGATTCTTCCGAATTTGGGAACTTCCGGATCATGCTGCGACAGGTCTTGTTGGAAAATTCCGACCATCTATTCCTCTTAGTCAGgtatactcttgttcttttaaatttaaagggca----cttgatgcagtgaaatgcgtcctgaaatgctctaactagcaaaatat-----attttttt-tgtacttttagtcaatttatatttca-tgtcttatctgttgtag

upper sequence: Vv08s0040g00670.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA03G27600.1 (Glycine max), 5'ss of exon 14
AATTGATCATATACTGGGTTTCTTTAGAATCTGGGAGCTTCCAGAGCATGCTATGACAGGTCTAGTTGGAAAGTTCCGACCATCTATCCCTCTAAGTCAGgtactgccatgccagcctaatacaaatagttagattttctatacaaaaaatgagggcaagagtggtttagttgttaagataatgtaaatccattcatgttcttttaggcaattcactccaaaataatgctcctgttgtag
 |||||||| ||| |||| |||||  |||| ||||| ||||| || ||||||  ||||||||| |||||||| |||||||||||||| ||||| |||| ||||    ||||      |||    ||  |  |     |  || ||   |||| |  |   | || | ||  |   || |         |   ||   || ||||||| ||||| |      | |       |||||||||
GATTGATCACATATTGGGATTCTTCCGAATTTGGGAACTTCCGGATCATGCTGCGACAGGTCTTGTTGGAAAATTCCGACCATCTATTCCTCTTAGTCTGgtatactcatgttcttttaaatttaaagggca----ctggatgcagtgaatgcgtcctgaactgctctaactagcaaaa------gttttttttttggtgcttttagtcaatttatatttca-tgtcttatctgttgtag

upper sequence: Vv08s0040g00670.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT2G40840.1 (Arabidopsis thaliana), 5'ss of exon 14
AATTGATCATATACTGGGTTTCTTTAGAATCTGGGAGCTTCCAGAGCATGCTATGACAGGTCTAGTTGGAAAGTTCCGACCATCTATCCCTCTAAGTCAGgtactgccatgccagcctaatacaaatagttagattttctatacaaaaaatgagggcaagagtggtttagttgttaagataatgtaaatccattcatgttcttttaggcaattcactccaaaataatgctcctgttgtag
 |||||||||||| |||| ||||| |||||||||||||||||||  ||||||||||| ||| |||| || |||||||| |||||||| ||| ||||||||||||       | |||   || |  | ||||| |          ||||  ||      |||||   ||  |  | ||  |  ||   || ||                                                
GATTGATCATATATTGGGATTCTTCAGAATCTGGGAGCTTCCAGCTCATGCTATGACTGGTTTAGTGGGGAAGTTCCGTCCATCTATTCCTTTAAGTCAGgtac------acaagctacatgcttacagttaaaa---------aaaacttggctttgagagttacttgatgataaaactgctgctgatgcag-----------------------------------------------