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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATCATTTGTAATGTGGATGAGAAGGACATTGCTGAACACCTTAGGgtaaaacatttggttttatttgtaattgaactacagagatttggtaatttccatgtgtctgcatgtgtggatccagactgacaatcaaaatctaatcccag

Basic information

species Vitis vinifera
transcript Vv08s0032g00600.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0032g00600.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os11g36470.1 (Oryza sativa), 5'ss of exon 9
GAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATCATTTGTAATGTGGATGAGAAGGACATTGCTGAACACCTTAGGgtaaaacatttggttttatttgtaattgaactacaga-gatttggtaatttccatgtgtctgcatgtgtggatccagactgacaatcaaaatctaatcccag---
 || || |||||||| ||||||||||| || || ||||| ||||| ||||| ||||| || |||||||| |||||||||||||||||||| ||  | ||||||     ||   ||  |||   | |    ||   |   ||||  |   | ||| |  |  | |  |       ||   || |||   | |  |   |||||   
AAAGTATTCAAATGCCTACATGCTTGTCTACATCCGTGAGAGTGATAAGGACAAAATAATGTGTAATGTTGATGAGAAGGACATTGCTGAGCATTTAAGGgtatg-tgttgttttgcattctcactcctccttgggccaatttcctcgataccacg-attggaaaataccatcgcatg-tgtcaac--acacgtgggcccaggcc

upper sequence: Vv08s0032g00600.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 5'ss of exon 13
GAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATCATTTGTAATGTGGATGAGAAGGACATTGCTGAACACCTTAGGgtaa--aacatttggttttatttgtaattgaactacagagatttggtaatttccatgtgtctgcatgtgtggatccagactgacaatcaaaatctaatcccag
 || || || ||||| ||||||||||| ||||| ||||| || |||||||| ||||| || |||||||| ||||| |||||||| ||||| ||  |  ||||||  | |||     ||    |    |   | |    |  ||    | ||| || |||| |   || | | || ||      |  |   |            
AAAGTATTCGAATGCCTACATGCTTGTCTATATTCGTGAGAGCGACAAGGATAAAATAATGTGTAATGTTGATGAAAAGGACATCGCTGAGCATTTGCGGgtaagtatcatgcatattctcctaccttcctattcagtattttatacatttttcaggtgttt---tgagggaattcaactgtgctcttgcag-----------

upper sequence: Vv08s0032g00600.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os01g56490.1 (Oryza sativa), 5'ss of exon 13
GAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATCATTTGTAATGTGGATGAGAAGGACATTGCTGAACACCTTAGGgtaaaacatttggttttatttgtaattgaactacagagatttggtaatttccatgtgtctgcatgtgtggatccagactgacaatcaaaatctaatcccag
 ||  | |||||||| |||||||||||||| || |||||||||||||  || ||||| ||||| ||| | ||||| || |||||  | |||||||||| ||||| || | |    || | | |  |||     || |||  | ||   |   ||||   || |    |  | ||||                         
TAAGCATTCAAATGCTTACATGCTTGTGTACATTCGTGAAAGTGACAGAGAAAAAATTATTTGCAATTTAGATGAAAACGACATACCAGAACACCTTAAGgtaatacttcttcccttttcttttcttgggtatcacagaacttgt---tctgatgt-catgaaaaccttta-ccag-------------------------

upper sequence: Vv08s0032g00600.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G303655_T01 (Zea mays), 5'ss of exon 3
GAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATCATTTGTAATGTGGATGAGAAGGACATTGCTGAACACCTTAGGgtaaaacatttggttttatttgta-attgaactacagagatttggtaatttccatgtgtctgcatgtgtggatccagactgacaatcaaaatctaatcccag
 || || || ||||| ||||||||||| ||||||||||| |||||||| |||||||| || |||||||| |||||||||||||| ||||| ||  |  ||||||    || |||  |   |||| | |   | ||     ||||   ||   | ||| | |   | ||  |||   || |||       | |||  |  |||
AAAGTATTCGAATGCCTACATGCTTGTCTATATACGTGAGAGTGACAAAGAGAAAATAATGTGTAATGTCGATGAGAAGGACATCGCTGAGCATTTGCGGgtaagtagttcggtagttcctgtatactttcccacttttctttgt--atcatcttgtatttttgt-tgaagatagtgattgattgaactattctt-ttacag

upper sequence: Vv08s0032g00600.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 13
GAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATCATTTGTAATGTGGATGAGAAGGACATTGCTGAACACCTTAGGgtaaaacatttggttttatttgtaattgaactacagagatttggtaatttccatgtgtctgcatgtgtggatccagactgacaatcaaaatctaatcccag
 || || |||||||| ||||||||||| ||||||||||| | ||||||||| ||||| || |||||||| ||||||||||| |||||||| ||  |  ||||||    ||  | | || || |        |       | |    ||   | ||||| |   | ||  |||   || |||         |||  |  |||
AAAGTATTCAAATGCCTACATGCTTGTCTATATACGTGAGAATGACAAGGATAAAATAATGTGTAATGTCGATGAGAAGGATATTGCTGAGCATTTGCGGgtaagtagttctggtatactt-tgtccccttt-------tctatgtatcatcttgtgtttttgt-tggagatagtgattgattgaactgttctt-ttacag

upper sequence: Vv08s0032g00600.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 13
GAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATCATTTGTAATGTGGATGAGAAGGACATTGCTGAACACCTTAGGgtaaaacatttggttttatttgtaattgaactacagagatttggtaatttccatgtgtctgcatgtgtggatccagactgacaatcaaaatctaatcccag
 |||||||| ||||||||||||||||| ||||| || |||||||||||||| || || || || || || |||||||| |||||||| |||||  |  |||||| |                 |||| |  ||||  | |||  |  |||  |  |||||| || |   | |  |  | |  ||| |    |||   ||||
AAAATACTCGAATGCATACATGCTTGTTTATATTCGGGAAAGTGACAAGGATAAGATAATCTGCAACGTTGATGAGAAAGACATTGCGGAACATTTGCGGgtaaga-----------------aattcatatacacgggttt--tcctttttacctgtctggatttt--gcttgattcagctaattacttccta---ccag

upper sequence: Vv08s0032g00600.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: AT5G06600.3 (Arabidopsis thaliana), 5'ss of exon 13
GAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATCATTTGTAATGTGGATGAGAAGGACATTGCTGAACACCTTAGGgtaaaacattt--ggttttatttgtaattgaactacagagatttggtaatttccatgtgtctgcatgtgtggatccagactgacaatcaaaatctaatcccag
 || ||||| ||||| ||||||||||| ||||| || ||||||||||| || ||||| || || || || |||||||| ||||| || |||||  | ||||||||| ||||  ||   | ||  || | |       | |  |||||  ||| | ||    | |||   |  ||   ||| |                     
AAAGTACTCGAATGCTTACATGCTTGTATATATCCGAGAAAGTGACAAAGATAAAATAATCTGCAACGTTGATGAGAAAGACATAGCAGAACATTTAAGGgtaaaatattttcgggcattttcttagtagtttatttgcgtcttggt--tttacctgatcgttcat---tacattttgacag---------------------

upper sequence: Vv08s0032g00600.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: PP1S42_181V6.1 (Physcomitrella patens), 5'ss of exon 13
GAAATACTCAAATGCATACATGCTTGTGTATATACGTGAAAGTGACAAGGAGAAAATCATTTGTAATGTGGATGAGAAGGACATTGCTGAACACCTTAGGgtaaaacatttg--gttttatttgtaattgaactacagagatttggtaatttccatgtgtctgcatgtgtggatccaga--ctgacaatcaaaatctaatcccag---------------
|||||| || || ||||||||| | ||||||||  | ||   ||| || || ||  |  ||||||||||||||||||| |||||||| |||||| |   |||||  |   ||  |    | | |  ||         |    || ||   |  ||| |   || | ||||  ||  |    || |   ||  | |   |||                   
GAAATATTCGAACGCATACATGTTGGTGTATATCAGAGAGGCTGATAAAGACAAGGTTGTTTGTAATGTGGATGAGAAAGACATTGCAGAACACTTACAGgtaactctactgtagacaaactagctatcatttggtggcctgtttgtttatctcattttcgtgtaagtgttcattgaatttctaattgtctgatttgcatcatgtgatttatcgatttag