1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGGGATGCATGATCAGCTTTACAATCTACAGATGCTTGAGGCTGCTTTTTACAAGCTTCCTCAACCTAAAGACTCGGAACGTGCAAGGAACTATACTCCAgtatgacagtatcttgatttatgtggtattgcaaagttttctatagccatttatacggtataaatatatgtttttcctgtttcttctacag
species | Vitis vinifera |
transcript | Vv08s0007g07570.t01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ACAAGCTTCCTCAACCTAAAGACTCGGAACGTGCAAGGAACTATACTCCA AGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTACAGGCACCCATTEST: gi|110367437|gb|EC931370.1|EC931370
genomic: ACAAGCTTCCTCAACCTAAAGACTCGGAACGTGCAAGGAACTATACTCCAgtatgacagt ... tcttctacagAGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTACAGGCACCCATT
EST: ACAAGCTTCCTCAACCTAAAGACTCGGAACGTGCAAGGAACTATACTCCA AGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTACAGGCACCCATTEST: gi|352764974|gb|FQ473622.1|FQ473622
genomic: ACAAGCTTCCTCAACCTAAAGACTCGGAACGTGCAAGGAACTATACTCCAgtatgacagt ... tcttctacagAGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTACAGGCACCCATT
EST: ACAAGCTTCCTCAACCTAAAGACTCGGAACGTGCAAGGAACTATACTCCA AGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTACAGGCACCCATTEST: gi|110694277|gb|EE071242.1|EE071242
genomic: ACAAGCTTCCTCAACCTAAAGACTCGGAACGTGCAAGGAACTATACTCCAgtatgacagt ... tcttctacagAGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTACAGGCACCCATT
EST: ACAAGCTTCCTCAACCTAAAGACTCAGAACGTGCAAGGAACTATACTCCA AGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTGCAGGCACCCATTEST: gi|110390511|gb|EC955423.1|EC955423
genomic: ACAAGCTTCCTCAACCTAAAGACTCGGAACGTGCAAGGAACTATACTCCAgtatgacagt ... tcttctacagAGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTACAGGCACCCATT
EST: ACAAGCTTCCTCAACCTAAAGACTCGGAACGTGCAAGGAACTATACTCCA AGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTACAGGCACCCATTEST: gi|352768017|gb|FQ467416.1|FQ467416
genomic: ACAAGCTTCCTCAACCTAAAGACTCGGAACGTGCAAGGAACTATACTCCAgtatgacagt ... tcttctacagAGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTACAGGCACCCATT
EST: ACAAGTTTCCTCAACCTAAAGACTCGGAACGTGCAAGGAACTATACTCCA AGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTACAGGCACCCATTEST: gi|352773888|gb|FQ473020.1|FQ473020
genomic: ACAAGCTTCCTCAACCTAAAGACTCGGAACGTGCAAGGAACTATACTCCAgtatgacagt ... tcttctacagAGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTACAGGCACCCATT
EST: ACAAGCTTCCTCAACCTAAAGACTCGGAACGTGCAAGGAACTATACTCCA AGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTACAGGCACCCATT
genomic: ACAAGCTTCCTCAACCTAAAGACTCGGAACGTGCAAGGAACTATACTCCAgtatgacagt ... tcttctacagAGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTACAGGCACCCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGATGCATGATCAGCTTTACAATCTACAGATGCTTGAGGCTGCTTTTTACAAGCTTCCTCAACCTAAAGACTCGGAACGTGCAAGGAACTATACTCCAgtatgacagtatcttgatttatgtggtattgcaaagttttctatagccatttatacggtataaatatatgtttttcctgtttcttctacag
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA