Sequence
atgc intronic sequence ATGC exonic sequenceATCGGTGATTGCTTGGGCACTTTGATCAAAACCTTCAAGTCTTCTTTCTTGCCTTTCTTTGATGAGCTTTCATCTTACCTGATGCCTATGTGGgtaagtttaatagtatgttggtgtttgtttgccttttcatttgttgttcttttgggttttaggtttgctttctttaatgccttcatgctcctttttgttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07240.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA19G29010.1 (Glycine max), 5'ss of exon 13
ATCGGTGATTGCTTGGGCACTTTGATCAAAACCTTCAAGTCTTCTTTCTTGCCTTTCTTTGATGAGCTTTCATCTTACCTGATGCCTATGTGGgtaagtttaatagtatgttggtgtttgtttgcctt----ttcatttgttgttcttttgggttttaggtttgctttctttaatgccttcatgctcctttttgttt
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GTTGGTGATTGCTTGGGAACTTTGATAAAAACATTCAGGACATCTTTCTTGCCTTTCTTTGATGAGCTGTCCTCATACCTAACACCTTTGTTTgtaagtttcttttcattcctttaataatgtatcttgaatgtgtcttgaagtttttttatgttcttgcttaaaagtt----gtattctctttcctctcattgttt
upper sequence: Vv08s0007g07240.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA16G04400.1 (Glycine max), 5'ss of exon 13
ATCGGTGATTGCTTGGGCACTTTGATCAAAACCTTCAAGTCTTCTTTCTTGCCTTTCTTTGATGAGCTTTCATCTTACCTGATGCCTATGTGGgtaagtttaatagtatgttggtgtttgtttgccttttcatttgttgttcttttgggttttaggtttgctttctttaatgccttcatgctcctttttgttt----
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GTTGGTGATTGCTTGGGAACTTTGATAAAGACATTCAGGGCATCTTTCTTGCCTTTCTTTGATGATCTGTCCTCATACCTAACTCCTATGTTTgtaagtttctttttattccttttataattcctttaataatgtatcttccttt--gctgctagaatg--tgtctttagtttttttatgttcttgcttaaaagttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37184053|gb|CF603407.1|CF603407EST: CTTTCTTGCCTTTCTTTGATGAGCTTTCATCTTACCTGATGCCTATGTGG GGTAAAGATAAAACGGCCGAAGAGAGAAGAATTGCCATTTGTATATTTGAT
genomic: CTTTCTTGCCTTTCTTTGATGAGCTTTCATCTTACCTGATGCCTATGTGGgtaagtttaa ... gcttatgcagGGTAAAGATAAAACGGCCGAAGAGAGAAGAATTGCCATTTGTATATTTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCGGTGATTGCTTGGGCACTTTGATCAAAACCTTCAAGTCTTCTTTCTTGCCTTTCTTTGATGAGCTTTCATCTTACCTGATGCCTATGTGGgtaagtttaatagtatgttggtgtttgtttgccttttcatttgttgttcttttgggttttaggtttgctttctttaatgccttcatgctcctttttgttt
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