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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGTTGATCAGACTGTTCAAGAGTTTCTTACTGAGTACTTGGAGTTGCATCCGGATGTTCTTGATTTGATTCTTTCCAAATCTCTAAATGCTCTCAAGgtacccttctcatagctcataagttataatgttactttgtttcaataatcctaggactaatttaagttgctctcttcaaggactccatccatggactgatgcatatttacactgataatgtcttttcttttcctaattag

Basic information

species Vitis vinifera
transcript Vv08s0007g05120.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g05120.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: LOC_Os01g16290.1 (Oryza sativa), 5'ss of exon 13
AGTGGTTGATCAGACTGTTCAAGAGTTTCTTACTGAGTACTTGGAGTTGCATCCGGATGTTCTTGATTTGATTCTTTCCAAATCTCTAAATGCTCTCAAGgtacccttctcatagctcataagttataatgttactttgtttcaataatcctaggactaatttaagttgctctcttcaaggactccatccatggactgatgcatatttacactgataatgtcttttcttttcctaattag
| | ||||| ||  ||||||||||   | | ||||||||||| ||||| ||||| |||||| | |||| |||||| || || || || ||||||||||||||||     | ||   | ||||   ||||  |||  | ||||     |||||    ||   ||||| | |  ||| |        |||        |||     || |  | ||| | |||                   
AATAGTTGAACAATCTGTTCAAGAAAATTTAACTGAGTACTTAGAGTTACATCCAGATGTTTTAGATTCGATTCTGTCAAAGTCCCTTAATGCTCTCAAGgtaca----taatctgttataaacgataac-ttaaatggttt-----atcctg---cttccttaagatacagtctgc--------catatgcactttgacatgaatctg-attgacagtgta------------------

upper sequence: Vv08s0007g05120.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA03G28290.1 (Glycine max), 5'ss of exon 13
AGTGGTTGATCAGACTGTTCAAGAGTTTCTTACTGAGTACTTGGAGTTGCATCCGGATGTTCTTGATTTGATTCTTTCCAAATCTCTAAATGCTCTCAAGgtacccttctcatagctcataagttataatgttactttgtttcaataatcctaggactaatttaagttgctctcttcaaggactccatccatggactgatgcatatttacactgataatgtcttttcttttcctaattag
||||||||||||  || ||||||| | |||||||||||| || || |||||||| |||||||||||||   | ||||| ||| |||| |||||| ||||||||    |||| |   ||  |||||    |   | | ||| |    || ||||   ||  |   ||      |  ||||   || | |        |  ||  || |||                               
AGTGGTTGATCAATCTATTCAAGAATATCTTACTGAGTATTTAGAATTGCATCCAGATGTTCTTGATTCAGTACTTTCTAAAGCTCTTAATGCTTTCAAGgtaataatctctt---tctcaagtt----tacaattctgtattttaaaccctattgctcttgataggaatgttaatcaaaagcttccttgtgaatttattgtctaattag------------------------------

upper sequence: Vv08s0007g05120.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA19G31030.1 (Glycine max), 5'ss of exon 13
AGTGGTTGATCAGACTGTTCAAGAGTTTCTTACTGAGTACTTGGAGTTGCATCCGGATGTTCTTGATTTGATTCTTTCCAAATCTCTAAATGCTCTCAAGgtacccttctcatagctcataagttataatgttactttgtttcaataatcctaggactaatttaagttgctctcttcaaggactccatccatggactgatgcatatttacactgataatgtcttttcttttcctaattag
||||||||||||  || |||| || | |||||||||||| || || ||||||||||||||||||||||   | ||||| ||| |||| |||||| | ||||||    |||| |   ||  |||||    |  || | ||| |    || ||||   ||  |   ||      |   |||   || | |        |  ||  || |||                               
AGTGGTTGATCAATCTATTCAGGAATATCTTACTGAGTATTTAGAATTGCATCCGGATGTTCTTGATTCAGTACTTTCTAAAGCTCTTAATGCTTTTAAGgtaataatctctt---tctcaagtt----tactattctgtattttaaaccctattgctgttgataggaatgttaaccaaaagcttccttgtgaatttattgtctaattag------------------------------