Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCATGCGATGTGCCTCTTTGGGCAACAATTGGGGGACAGGATGTAGAGCGACTTCCCTCAGCTTCCACATGCTACAACACGCTCAAGgtacatctccttgtctacttcatcaatttttatagcaaggcacagagcttggaacatccaattcaacctattagaccatactgtaatcttatatctaccatctttacttatgtgcatgttttttttttttttttaacttttttgttttaatggttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04290.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GRMZM2G461948_T01 (Zea mays), 5'ss of exon 13
GTTGCATGCGATGTGCCTCTTTGGGCAACAATTGGGGGACAGGATGTAGAGCGACTTCCCTCAGCTTCCACATGCTACAACACGCTCAAGgtacatctccttgtctact--tcatcaatttttatagcaaggcacagagcttggaacatccaattcaacctattagaccatactgtaatcttatatctaccatctttacttatgtgcatgttttttttttttttttaacttttttgttttaatggttgcag
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GTTCCATGTGATGTAACACTTTGGGCATCAATTGGAGGCCAAGATGTAGATCGTCTTCCATCTGCTTCCACATGCTACAATACGCTCAAGgtataaccgtatagc-actgaccagtgacattcatactgtcgtttatgctct----cttctaaccttttctaat---cctttctgttaccttcag------------------------------------------------------------------
upper sequence: Vv08s0007g04290.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA03G34650.1 (Glycine max), 5'ss of exon 14
GTTGCATGCGATGTGCCTCTTTGGGCAACAATTGGGGGACAGGATGTAGAGCGACTTCCCTCAGCTTCCACATGCTACAACACGCTCAAGgtacatctccttgtctacttcatcaatttttatagcaaggcacagagcttggaacatcca-attcaacctattagaccatactgtaatcttatatctaccatctttacttatgtgcatgttttttttttttttttaacttttttgttttaatggttgcag
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GTTGCATGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGATCGACTTCCATCAGCTTCAACCTGCTACAATACTCTTAAGgtac----------------tactaat----atagtaatagggaagacggaagacatccttatgttacttgtgag-ttatatgacatattgaactttagaatcttgaa--attttcataatcc-------------------------------------
upper sequence: Vv08s0007g04290.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA19G37310.2 (Glycine max), 5'ss of exon 15
GTTGCATGCGATGTGCCTCTTTGGGCAACAATTGGGGGACAGGATGTAGAGCGACTTCCCTCAGCTTCCACATGCTACAACACGCTCAAGgtacatctccttgtctacttcatcaatttttatagcaaggcacagagcttggaacatccaattcaacctattagaccatactgtaatcttatatctaccatctttacttatgtgcatgttttttttttttttttaacttttttgttttaatggttgcag
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GTTGCATGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACCCTTAAGgta-ata-------ctaatatagtaata-----gggaagacggaagacatggt-tatgttacttg-tgggttatatgacattgaactttagaatcttgaaaatttcataatct-ca-------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110363275|gb|EC926852.1|EC926852EST: AGGATGTAGAGCGACTTCCCTCAGCTTCCACATGCTACAACACGCTCAAG CTTCCTACATACAAACGCCCTAGCACTTTGAGAGCAAAGCTTCTATATGCA
genomic: AGGATGTAGAGCGACTTCCCTCAGCTTCCACATGCTACAACACGCTCAAGgtacatctcc ... atggttgcagCTTCCTACATACAAACGCCCTAGCACTTTGAGAGCAAAGCTTCTATATGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCATGCGATGTGCCTCTTTGGGCAACAATTGGGGGACAGGATGTAGAGCGACTTCCCTCAGCTTCCACATGCTACAACACGCTCAAGgtacatctccttgtctacttcatcaatttttatagcaaggcacagagcttggaacatccaattcaacctattagaccatactgtaatcttatatctaccatctttacttatgtgcatgttttttttttttttttaacttttttgttttaatggttgcag
- - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT