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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATAATGTGTTTCAAATCGCATTTATTGTTCTTGCCGGATTGACCTTCGTATATTATGCGGCCTTTgtaagtgatacttgacttggtacttcttgtgtagtctgatcgtaaagaccaatgccaattttcattattcttggaactttcag

Basic information

species Vitis vinifera
transcript Vv08s0007g02270.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 13
GTATAATGTGTTTCAAATCGCATTTATTGTTCTTGCCGGATTGACCTTCGTATATTATGCGGCCTTTgtaagtgatacttgacttggtact-tcttgtgtagtctgatcgtaaagaccaatgccaattttcattattcttggaactttcag---------------
||| ||||| || ||||| |||||| ||||| | || ||||||||||| || ||||| || ||||||||||||    ||   ||  ||  | |  |        |  || |  |    |||    || ||  || | ||   |  |||                  
GTACAATGTATTCCAAATTGCATTTGTTGTTTTGGCTGGATTGACCTTTGTGTATTACGCCGCCTTTgtaagtttacctctgctaagtgttattctccccctatttttcatgtatgttaat----atcttgcttgtactaaaaggttttgaatatggaaatatcag

upper sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 13
GTATAATGTGTTTCAAATCGCATTTATTGTTCTTGCCGGATTGACCTTCGTATATTATGCGGCCTTTgtaagtgatacttgacttggtacttcttgtgtagtctgatcgtaaagaccaatgccaattttcattattcttggaactttcag-------------
||| ||||| || ||||| |||||| ||||| | || ||||||||||| || ||||| || ||||||||||||    ||   ||| ||  || | |  || | |  || |  | |  |||  |  ||     || |    |   ||| |              
GTACAATGTATTCCAAATTGCATTTGTTGTTTTGGCTGGATTGACCTTTGTGTATTACGCTGCCTTTgtaagtttacctctgcttagtttttttcgcttatttt--tcatgtatattaatatc--ttgctggtactaaaaggtttttaatatggaaatatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30299809|gb|CB976603.1|CB976603
EST:     TCGCATTTATTGTTCTTGCCGGATTGACCTTCGTATATTATGCGGCCTTT                         GGATGGAGAAGAAGAAGACCTAGTGGCAGGTTCCAGCTGTCCAGTTGAATT
genomic: TCGCATTTATTGTTCTTGCCGGATTGACCTTCGTATATTATGCGGCCTTTgtaagtgata ... gaactttcagGGATGGAGAAGAAGAAGACCTAGTGGCAGGTTCCAGCTGTCCAGTTGAATT
EST: gi|110413748|gb|EC979554.1|EC979554
EST:     TCGCATTTATTGTTCTTGCCGGATTGACCTTCGTATATTATGCGGCCTTT                         GGATGGAGAAGAAGAAGACCTAGTGGCAGGTTCCAGCTGTCCAGTTGAATT
genomic: TCGCATTTATTGTTCTTGCCGGATTGACCTTCGTATATTATGCGGCCTTTgtaagtgata ... gaactttcagGGATGGAGAAGAAGAAGACCTAGTGGCAGGTTCCAGCTGTCCAGTTGAATT
EST: gi|32267836|gb|CD716995.1|CD716995
EST:     TCGCATTTATTGTTCTTGCCGGATTGACCTTCGTATATTATGCGGCCTTT                         GGATGGAGAAGAAGAAGACCTAGTGGCAGGTTCCAGCTGTCCAGTTGAATT
genomic: TCGCATTTATTGTTCTTGCCGGATTGACCTTCGTATATTATGCGGCCTTTgtaagtgata ... gaactttcagGGATGGAGAAGAAGAAGACCTAGTGGCAGGTTCCAGCTGTCCAGTTGAATT
EST: gi|110361016|gb|EC924466.1|EC924466
EST:     TCGCATTTATTGTTCTTGCCGGATTGACCTTCGTATATTATGCGGCCTTT                         GGATGGAGAAGAAGAAGACCTAGTGGCAGGTTCCAGCTGTCCAGTTGAATT
genomic: TCGCATTTATTGTTCTTGCCGGATTGACCTTCGTATATTATGCGGCCTTTgtaagtgata ... gaactttcagGGATGGAGAAGAAGAAGACCTAGTGGCAGGTTCCAGCTGTCCAGTTGAATT
EST: gi|22009162|gb|BQ794196.1|BQ794196
EST:     TCGCATTTATTGTTCTTGCCGGATTGACCTTCGTATATTATGCGGCCTTT                         GGATGGAGAAGAAGAAGACCTAGTGGCAGGTTCCAGCTGTCCAGTTGAATT
genomic: TCGCATTTATTGTTCTTGCCGGATTGACCTTCGTATATTATGCGGCCTTTgtaagtgata ... gaactttcagGGATGGAGAAGAAGAAGACCTAGTGGCAGGTTCCAGCTGTCCAGTTGAATT