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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCTGAGGGGCTGGAAATGTGTGTTCGTCTTATGCTGCCAGGGGAGATAGCTCTTGTAACATGTCCTCCTGACTACGCATATGATAAGTTTCCCAGgttatattccaaatctagttattatatattatttatattgtggtgtgccaaaaaccaatgcataagtagaggtttattagttgaaactctaattgttattgttatcttcatcctcatcctattctttctcaaggttgcttgttaatgatacttgtgtttttctttaaccatatgattag

Basic information

species Vitis vinifera
transcript Vv08s0007g01460.t01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01460.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA01G26350.1 (Glycine max), 5'ss of exon 12
GTGCCTGAGGGGCTGGAAATGTGTGTTCGTCTTATGCTGCCAGGGGAGATAGCTCTTGTAACATGTCCTCCTGACTACGCATATGATAAGTTTCCCAGgtta-tattccaaatctagttattatatattatttatattgtggtgtgccaaaaaccaatgcataagtagaggt--ttattagttgaaactctaattgttattgttatcttcatcctcatcctattctttctcaaggttgcttgttaatgatacttgtgtttttctttaaccatatgattag
||||| |||||  | |||||| |||||||||| ||||| || || |||||||||||||| ||||| ||||||||||| || |||||||||||||| |||||  |  |  || |  |  | |||     | ||||     |  | |          |     | |||   ||   ||     |||||  | | |||  |||  |    | |||  |||| || |||| |  | |  ||  |  ||    ||||||   |  || | |||| |         
GTGCCAGAGGGATTTGAAATGAGTGTTCGTCTGATGCTTCCTGGAGAGATAGCTCTTGTCACATGCCCTCCTGACTATGCTTATGATAAGTTTCCAAGgttgctgatgaaagtacaccttttactgtgtgtttaaccaataatttagggttttgaagcattttagtgcgggcaattgcctattgaa--tgtgatttctatcttatgatccattgtcattctgttctattccta--ttcttcattggc-atacttcc-tccttttataactag--------

upper sequence: Vv08s0007g01460.t01 (Vitis vinifera), 5'ss of exon 13
lower sequence: GLYMA03G16440.1 (Glycine max), 5'ss of exon 12
GTGCCTGAGGGGCTGGAAATGTGTGTTCGTCTTATGCTGCCAGGGGAGATAGCTCTTGTAACATGTCCTCCTGACTACGCATATGATAAGTTTCCCAGgttatattccaaa----tctagttattatatatt--atttatattgtggtgtgccaaaaaccaatgcataagtagaggtttattagttgaaactctaattgttattgttatcttcatcctcatcctattctttctcaaggttgcttgttaatgatacttgtgtttttctttaaccatatgattag
|| || |||||  | |||||| |||||||| | ||||| || || |||||||||||||| ||||| ||||||||||| || |||||||||||||| |||||     | |||     |   ||| | | | ||  |   ||| | | |  |     || |  ||      |  |    ||   | |||||  | |  ||  |||    |  | |||  |||| || |||| |  | |   |||||  |    ||||||   |  || | | || |         
GTACCAGAGGGATTTGAAATGAGTGTTCGTTTGATGCTTCCTGGAGAGATAGCTCTTGTCACATGCCCTCCTGACTATGCTTATGATAAGTTTCCGAGgttgctgacgaaagtacaccttttactgtgtgtttaaccaataatttaggttttttgaagc--attttagtgcgggcaattgccaattgaa--tatggtttctatctgaagatccattgtcattctgttctattccta---tgctttattgccatacttcc-tccttttatgactag--------